Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2374 and GFF2375 are separated by 14 nucleotides
GFF2374 - Type I secretion system ATPase, LssB family LapB, at 14,409 to 16,562
GFF2374
GFF2375 - Type I secretion system, membrane fusion protein LapC, at 16,577 to 17,764
GFF2375
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.590 kb on - strand, within GFF2374 at 15.590 kb on - strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.777 kb on + strand, within GFF2374 at 15.778 kb on - strand, within GFF2374 at 15.900 kb on + strand, within GFF2374 at 15.900 kb on + strand, within GFF2374 at 15.901 kb on - strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.943 kb on + strand, within GFF2374 at 15.944 kb on - strand, within GFF2374 at 15.944 kb on - strand, within GFF2374 at 15.985 kb on - strand, within GFF2374 at 15.985 kb on - strand, within GFF2374 at 16.199 kb on + strand, within GFF2374 at 16.199 kb on + strand, within GFF2374 at 16.200 kb on - strand, within GFF2374 at 16.561 kb on - strand at 16.587 kb on + strand at 16.587 kb on + strand at 16.588 kb on - strand at 16.979 kb on + strand, within GFF2375 at 16.979 kb on + strand, within GFF2375 at 16.980 kb on - strand, within GFF2375 at 17.148 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.201 kb on + strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.202 kb on - strand, within GFF2375 at 17.364 kb on + strand, within GFF2375 at 17.492 kb on + strand, within GFF2375 at 17.493 kb on - strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.498 kb on + strand, within GFF2375 at 17.499 kb on - strand, within GFF2375 at 17.499 kb on - strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.507 kb on + strand, within GFF2375 at 17.508 kb on - strand, within GFF2375 at 17.508 kb on - strand, within GFF2375 at 17.508 kb on - strand, within GFF2375 at 17.589 kb on - strand, within GFF2375 at 17.589 kb on - strand, within GFF2375 at 17.646 kb on + strand at 17.647 kb on - strand at 17.647 kb on - strand at 17.647 kb on - strand at 17.647 kb on - strand at 17.711 kb on + strand at 17.711 kb on + strand at 17.711 kb on + strand at 17.916 kb on + strand at 17.963 kb on + strand at 17.964 kb on - strand at 17.964 kb on - strand at 18.103 kb on + strand at 18.103 kb on + strand at 18.103 kb on + strand at 18.440 kb on + strand at 18.440 kb on + strand at 18.441 kb on - strand at 18.441 kb on - strand at 18.441 kb on - strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.483 kb on + strand at 18.484 kb on - strand at 18.484 kb on - strand at 18.684 kb on + strand at 18.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 15,590 - GFF2374 0.55 -0.9 15,590 - GFF2374 0.55 -0.7 15,777 + GFF2374 0.64 +0.3 15,777 + GFF2374 0.64 +0.1 15,777 + GFF2374 0.64 +0.1 15,778 - GFF2374 0.64 +0.2 15,900 + GFF2374 0.69 +2.1 15,900 + GFF2374 0.69 +0.3 15,901 - GFF2374 0.69 -0.6 15,943 + GFF2374 0.71 +0.5 15,943 + GFF2374 0.71 +0.0 15,943 + GFF2374 0.71 -0.1 15,943 + GFF2374 0.71 +0.1 15,943 + GFF2374 0.71 +0.2 15,944 - GFF2374 0.71 -0.2 15,944 - GFF2374 0.71 -0.0 15,985 - GFF2374 0.73 +0.5 15,985 - GFF2374 0.73 +0.5 16,199 + GFF2374 0.83 -0.3 16,199 + GFF2374 0.83 -0.4 16,200 - GFF2374 0.83 +0.3 16,561 - +0.5 16,587 + +0.2 16,587 + +0.8 16,588 - -0.0 16,979 + GFF2375 0.34 -0.2 16,979 + GFF2375 0.34 -1.0 16,980 - GFF2375 0.34 -0.2 17,148 + GFF2375 0.48 +0.1 17,201 + GFF2375 0.53 -1.2 17,201 + GFF2375 0.53 +0.2 17,201 + GFF2375 0.53 -0.0 17,201 + GFF2375 0.53 -1.8 17,201 + GFF2375 0.53 -0.6 17,202 - GFF2375 0.53 +0.3 17,202 - GFF2375 0.53 -0.1 17,202 - GFF2375 0.53 +0.9 17,364 + GFF2375 0.66 +0.2 17,492 + GFF2375 0.77 -0.2 17,493 - GFF2375 0.77 +0.5 17,498 + GFF2375 0.78 +0.2 17,498 + GFF2375 0.78 -0.1 17,498 + GFF2375 0.78 -0.7 17,499 - GFF2375 0.78 -0.4 17,499 - GFF2375 0.78 +0.3 17,507 + GFF2375 0.78 +0.2 17,507 + GFF2375 0.78 -0.4 17,507 + GFF2375 0.78 +0.5 17,508 - GFF2375 0.78 -0.2 17,508 - GFF2375 0.78 +0.0 17,508 - GFF2375 0.78 -0.7 17,589 - GFF2375 0.85 -0.5 17,589 - GFF2375 0.85 +0.4 17,646 + +0.0 17,647 - -0.4 17,647 - -0.7 17,647 - +0.3 17,647 - +0.2 17,711 + +0.3 17,711 + -0.1 17,711 + -0.8 17,916 + +0.5 17,963 + +1.2 17,964 - -0.3 17,964 - -0.5 18,103 + +0.4 18,103 + -0.2 18,103 + +0.3 18,440 + -0.3 18,440 + -0.1 18,441 - +0.8 18,441 - +0.4 18,441 - +0.3 18,483 + -0.4 18,483 + -0.1 18,483 + +0.9 18,483 + -0.0 18,483 + -1.8 18,483 + +0.2 18,484 - +0.6 18,484 - +0.2 18,684 + +1.2 18,755 + -0.5
Or see this region's nucleotide sequence