Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2372

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
11,007	+		GFF2370	0.41	-0.3
11,229	+		GFF2370	0.72	-0.2
11,230	-		GFF2370	0.72	+0.1
11,230	-		GFF2370	0.72	+0.7
11,275	-		GFF2370	0.79	-1.7
11,326	+		GFF2370	0.86	+0.1
11,326	+		GFF2370	0.86	+0.2
11,327	-		GFF2370	0.86	-0.5
11,327	-		GFF2370	0.86	+0.1
11,327	-		GFF2370	0.86	-1.4
11,327	-		GFF2370	0.86	-0.2
11,502	-				+0.1
11,944	+				-0.3
11,944	+				+0.1
11,944	+				-0.9
11,945	-				+0.0
11,945	-				-2.1
12,169	-		GFF2372	0.18	-0.1
12,300	+		GFF2372	0.30	+0.7
12,300	+		GFF2372	0.30	+0.1
12,300	+		GFF2372	0.30	-0.3
12,300	+		GFF2372	0.30	+0.7
12,301	-		GFF2372	0.30	-0.5
12,301	-		GFF2372	0.30	-0.5
12,301	-		GFF2372	0.30	-0.5
12,451	-		GFF2372	0.45	+0.4
12,501	+		GFF2372	0.50	+0.1
12,502	-		GFF2372	0.50	+0.4
12,502	-		GFF2372	0.50	-0.0
12,659	-		GFF2372	0.65	+1.7
12,659	-		GFF2372	0.65	+0.5
12,659	-		GFF2372	0.65	-1.0
12,925	-				+0.8
13,000	-				-0.2