Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2358

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
568	+		GFF2356	0.67	+0.4
568	+		GFF2356	0.67	-0.5
569	-		GFF2356	0.67	+0.3
589	+		GFF2356	0.77	-0.5
589	+		GFF2356	0.77	+0.3
589	+		GFF2356	0.77	-0.3
589	+		GFF2356	0.77	-0.3
589	+		GFF2356	0.77	+0.6
589	+		GFF2356	0.77	+0.6
589	+		GFF2356	0.77	+0.2
590	-		GFF2356	0.77	+0.3
590	-		GFF2356	0.77	-0.3
590	-		GFF2356	0.77	-0.2
595	+		GFF2356	0.80	+1.7
595	+		GFF2356	0.80	-0.6
595	+		GFF2356	0.80	+1.0
595	+		GFF2356	0.80	-0.1
596	-		GFF2356	0.80	+0.0
596	-		GFF2356	0.80	-0.7
629	+				+0.8
750	+				-0.0
751	-				+1.0
759	+				-0.7
760	-				+0.3
790	-				-0.1
790	-				+1.0
801	+				-0.0
801	+				+1.0
801	+				+0.2
801	+				+0.9
801	+				-0.1
802	-				+0.7
931	+				+0.1
931	+				+0.5
932	-				-0.1
1,217	+				+1.0
1,390	-				-0.0
1,516	+				+0.2
1,517	+				+0.2
1,517	-				-0.2
1,517	-				+0.4
1,551	+				+0.4
1,552	-				+0.0
1,561	+				+0.0
1,561	+				-0.8
1,561	+				+0.1
1,562	-				-0.2
1,562	-				-0.1
1,562	-				-0.1
1,562	-				+0.1
1,791	+		GFF2358	0.88	-0.1
1,791	+		GFF2358	0.88	-0.1
1,791	+		GFF2358	0.88	-0.1
1,791	+		GFF2358	0.88	+0.3
1,791	+		GFF2358	0.88	-1.1
1,792	-		GFF2358	0.88	-0.1
1,792	-		GFF2358	0.88	-0.0
1,792	-		GFF2358	0.88	+0.7
1,792	-		GFF2358	0.88	-0.8
1,792	-		GFF2358	0.88	+1.7
1,792	-		GFF2358	0.88	+0.1
1,967	-				+0.1
1,993	-				+0.5
1,996	+				+1.1
1,996	+				-1.3
1,996	+				-0.5
1,997	-				+0.9
2,016	-				-0.1
2,037	+				+0.1
2,037	+				-0.2
2,037	+				+1.3
2,037	+				+1.0
2,037	+				-0.1
2,038	-				+0.3
2,038	-				-1.7
2,038	-				+0.4
2,038	-				-0.2
2,038	-				-0.1
2,038	-				-0.2
2,038	-				-0.0
2,038	-				+0.2
2,097	+				-0.5
2,098	-				-0.2
2,128	-				-0.3
2,128	-				+0.7
2,128	-				-0.2
2,164	+				-0.5
2,313	+				-0.2
2,313	+				+0.1
2,314	-				-0.2
2,314	-				-0.1
2,314	-				-0.8
2,314	-				-0.5
2,480	+		GFF2359	0.27	-1.6
2,480	+		GFF2359	0.27	+0.3
2,512	-		GFF2359	0.32	+0.1
2,512	-		GFF2359	0.32	+0.6
2,603	-		GFF2359	0.46	+0.1
2,603	-		GFF2359	0.46	+0.2
2,824	+		GFF2359	0.80	-0.3
2,824	+		GFF2359	0.80	+0.3
2,824	+		GFF2359	0.80	+0.5
2,825	-		GFF2359	0.80	-0.3
2,825	-		GFF2359	0.80	-0.1
2,825	-		GFF2359	0.80	-1.3