Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2313

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,196,604	+		GFF2312	0.31	+0.6
1,196,604	+		GFF2312	0.31	-1.7
1,196,605	-		GFF2312	0.31	-0.1
1,196,605	-		GFF2312	0.31	+0.6
1,196,605	-		GFF2312	0.31	-0.2
1,196,605	-		GFF2312	0.31	+0.3
1,196,745	+		GFF2312	0.43	-1.1
1,196,745	+		GFF2312	0.43	-0.4
1,196,745	+		GFF2312	0.43	-0.2
1,196,994	+		GFF2312	0.66	-0.7
1,197,367	+				-0.5
1,197,367	+				-1.0
1,197,367	+				+0.5
1,197,367	+				+1.5
1,197,368	-				+0.2
1,197,368	-				-0.0
1,197,596	-		GFF2313	0.20	-0.9
1,197,655	+		GFF2313	0.27	-1.1
1,197,655	+		GFF2313	0.27	-1.5
1,197,656	-		GFF2313	0.27	-1.0
1,197,682	+		GFF2313	0.31	-0.3
1,197,682	+		GFF2313	0.31	-1.1
1,197,682	+		GFF2313	0.31	-1.0
1,197,856	+		GFF2313	0.53	-1.5
1,197,856	+		GFF2313	0.53	-0.4
1,197,856	+		GFF2313	0.53	-1.1
1,197,856	+		GFF2313	0.53	+0.6
1,197,856	+		GFF2313	0.53	+1.8
1,197,857	-		GFF2313	0.53	-0.2
1,197,857	-		GFF2313	0.53	-0.9
1,197,857	-		GFF2313	0.53	-1.1
1,197,946	+		GFF2313	0.64	-0.7
1,197,946	+		GFF2313	0.64	-0.1
1,197,946	+		GFF2313	0.64	-1.5
1,197,947	-		GFF2313	0.64	-0.9
1,197,947	-		GFF2313	0.64	-0.9
1,197,947	-		GFF2313	0.64	-1.4
1,197,947	-		GFF2313	0.64	+0.1
1,198,249	+				+0.3
1,198,249	+				-0.9
1,198,296	+				-0.0
1,198,296	+				-0.7
1,198,602	+		GFF2314	0.27	-0.6
1,198,602	+		GFF2314	0.27	-0.1
1,198,632	+		GFF2314	0.30	+0.0
1,198,632	+		GFF2314	0.30	-0.0
1,198,632	+		GFF2314	0.30	-0.1
1,198,632	+		GFF2314	0.30	+0.0
1,198,633	-		GFF2314	0.30	+0.6
1,198,633	-		GFF2314	0.30	+0.2
1,198,803	+		GFF2314	0.48	-1.1
1,198,803	+		GFF2314	0.48	-0.0
1,198,803	+		GFF2314	0.48	-0.4
1,198,803	+		GFF2314	0.48	+0.5
1,198,804	-		GFF2314	0.48	+0.2
1,198,806	-		GFF2314	0.48	-0.9
1,198,890	+		GFF2314	0.57	-0.8
1,198,890	+		GFF2314	0.57	-0.1
1,198,891	-		GFF2314	0.57	+1.1