Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2230

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,114,675	+		GFF2229	0.49	-1.2
1,114,675	+		GFF2229	0.49	-0.2
1,114,690	+		GFF2229	0.50	-0.4
1,114,691	-		GFF2229	0.50	-0.7
1,114,691	-		GFF2229	0.50	+0.1
1,114,691	-		GFF2229	0.50	-0.0
1,114,691	-		GFF2229	0.50	-1.3
1,114,691	-		GFF2229	0.50	+1.5
1,114,691	-		GFF2229	0.50	+0.9
1,114,691	-		GFF2229	0.50	-1.1
1,114,699	+		GFF2229	0.51	-0.2
1,114,699	+		GFF2229	0.51	-0.5
1,114,735	+		GFF2229	0.53	-0.4
1,114,756	+		GFF2229	0.54	+0.6
1,114,756	+		GFF2229	0.54	+0.9
1,114,756	+		GFF2229	0.54	-0.1
1,114,756	+		GFF2229	0.54	+0.4
1,114,756	+		GFF2229	0.54	-0.4
1,114,756	+		GFF2229	0.54	+0.2
1,114,789	+		GFF2229	0.56	+0.2
1,114,790	-		GFF2229	0.56	+0.5
1,114,790	-		GFF2229	0.56	+0.4
1,114,790	-		GFF2229	0.56	-0.3
1,114,999	+		GFF2229	0.67	-0.1
1,115,000	-		GFF2229	0.67	-0.5
1,115,041	+		GFF2229	0.69	+0.1
1,115,131	+		GFF2229	0.74	-0.0
1,115,248	+		GFF2229	0.80	-0.4
1,115,248	+		GFF2229	0.80	+0.6
1,115,248	+		GFF2229	0.80	-0.0
1,115,249	-		GFF2229	0.80	-1.0
1,115,498	-				-0.0
1,115,605	+				+0.6
1,115,606	-				-0.3
1,115,815	-		GFF2230	0.15	+0.5
1,115,925	+		GFF2230	0.26	+0.3
1,115,925	+		GFF2230	0.26	-0.5
1,115,926	-		GFF2230	0.26	+0.1
1,115,955	+		GFF2230	0.28	+0.1
1,115,955	+		GFF2230	0.28	+0.7
1,115,956	-		GFF2230	0.28	-0.7
1,115,956	-		GFF2230	0.28	-0.8
1,115,964	+		GFF2230	0.29	-1.0
1,115,964	+		GFF2230	0.29	-0.0
1,115,965	-		GFF2230	0.29	-0.9
1,116,060	+		GFF2230	0.38	-0.9
1,116,061	-		GFF2230	0.38	+0.5
1,116,061	-		GFF2230	0.38	-0.1
1,116,061	-		GFF2230	0.38	+0.1
1,116,061	-		GFF2230	0.38	+1.2
1,116,120	+		GFF2230	0.44	-0.2
1,116,120	+		GFF2230	0.44	-1.5
1,116,120	+		GFF2230	0.44	-0.1
1,116,120	+		GFF2230	0.44	+0.2
1,116,120	+		GFF2230	0.44	+0.2
1,116,121	-		GFF2230	0.44	+0.6
1,116,121	-		GFF2230	0.44	+0.5
1,116,121	-		GFF2230	0.44	-0.5
1,116,121	-		GFF2230	0.44	-0.2
1,116,121	-		GFF2230	0.44	-0.1
1,116,393	+		GFF2230	0.69	+0.0
1,116,393	+		GFF2230	0.69	+0.5
1,116,393	+		GFF2230	0.69	+0.2
1,116,394	-		GFF2230	0.69	+0.9
1,116,394	-		GFF2230	0.69	-2.0
1,116,394	-		GFF2230	0.69	+1.0
1,116,394	-		GFF2230	0.69	+0.3
1,116,394	-		GFF2230	0.69	+1.2
1,116,394	-		GFF2230	0.69	+0.1
1,116,405	+		GFF2230	0.70	+0.6
1,116,405	+		GFF2230	0.70	+0.1
1,116,405	+		GFF2230	0.70	+0.9
1,116,405	+		GFF2230	0.70	+0.3
1,116,405	+		GFF2230	0.70	-0.9
1,116,406	-		GFF2230	0.70	+0.5
1,116,406	-		GFF2230	0.70	-0.5
1,116,406	-		GFF2230	0.70	+0.1
1,116,406	-		GFF2230	0.70	-0.6
1,116,406	-		GFF2230	0.70	+0.1
1,116,406	-		GFF2230	0.70	+0.4
1,116,406	-		GFF2230	0.70	+0.2
1,116,406	-		GFF2230	0.70	-0.7
1,116,475	-		GFF2230	0.76	-1.9
1,116,475	-		GFF2230	0.76	+0.7
1,116,669	+				+1.0
1,116,669	+				-0.0
1,116,669	+				+0.5
1,116,670	-				-0.6
1,116,670	-				-0.0
1,116,670	-				+0.5
1,116,670	-				+0.8
1,116,670	-				+0.1
1,116,670	-				+1.3
1,116,670	-				+0.5
1,116,670	-				-1.0
1,116,717	+				+0.7
1,116,717	+				-0.1
1,116,718	-				-0.5
1,116,718	-				-0.5
1,116,755	-				+0.9
1,116,817	-		GFF2231	0.46	+0.6
1,116,834	+		GFF2231	0.58	-0.5
1,116,835	-		GFF2231	0.58	+0.2
1,116,835	-		GFF2231	0.58	+0.1
1,116,835	-		GFF2231	0.58	-0.9
1,116,897	-				-0.5
1,116,897	-				+0.2
1,116,920	+				-0.5
1,116,920	+				+0.5
1,116,921	-				-0.3
1,116,973	+				+0.1
1,116,973	+				+0.1
1,116,974	-				+0.1
1,116,974	-				+0.5
1,116,992	+				-0.5
1,116,992	+				-0.5
1,116,993	-				+0.4
1,117,003	+				-0.3
1,117,003	+				-1.0
1,117,003	+				-1.1
1,117,003	+				-0.2
1,117,003	+				+0.5
1,117,003	+				+0.1
1,117,003	+				+0.0
1,117,003	+				+0.0
1,117,004	-				+0.1
1,117,004	-				-0.3
1,117,004	-				+0.1
1,117,004	-				+0.1
1,117,004	-				+0.1
1,117,004	-				-0.5
1,117,004	-				+0.3
1,117,004	-				+0.9
1,117,010	-				-0.4
1,117,030	+				-0.1
1,117,030	+				-2.0
1,117,030	+				+0.1
1,117,031	-				-0.3
1,117,031	-				-0.1
1,117,031	-				-0.1
1,117,107	+				+0.3
1,117,108	-				+0.2
1,117,108	-				+1.2
1,117,121	+				-1.3
1,117,121	+				+0.0
1,117,121	+				-0.3
1,117,121	+				+0.1
1,117,122	-				-0.3
1,117,122	-				-0.4
1,117,122	-				+0.7
1,117,122	-				-0.8
1,117,122	-				+0.8
1,117,122	-				-0.8
1,117,122	-				+0.5
1,117,122	-				-1.9
1,117,122	-				+0.4
1,117,122	-				+0.1
1,117,125	+				+0.4
1,117,125	+				-0.1
1,117,125	+				-0.2
1,117,125	+				+0.9
1,117,125	+				+0.4
1,117,125	+				-0.0
1,117,125	+				+0.3
1,117,125	+				+0.3
1,117,126	-				-0.9
1,117,126	-				-0.9
1,117,126	-				-0.0
1,117,126	-				-0.3
1,117,126	-				-0.1
1,117,126	-				-2.0
1,117,126	-				+0.3
1,117,126	-				+0.3
1,117,126	-				-0.5
1,117,126	-				+0.9
1,117,126	-				+0.2
1,117,126	-				-0.1
1,117,126	-				-2.0
1,117,131	+				-0.0
1,117,139	+				-0.2
1,117,140	-				+0.1
1,117,219	+				-0.1
1,117,220	-				-1.0
1,117,220	-				-0.3
1,117,356	+				-0.9
1,117,357	-				-1.1
1,117,357	-				-0.3
1,117,357	-				-0.3
1,117,357	-				+0.5
1,117,428	+				-1.5
1,117,429	-				-0.4
1,117,429	-				+0.5
1,117,462	+				-0.4
1,117,463	-				-0.9
1,117,463	-				-1.1
1,117,463	-				-0.1
1,117,503	-				-0.0
1,117,622	+		GFF2232	0.21	-0.7
1,117,712	+		GFF2232	0.30	+0.0