Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2161

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,052,085	+		GFF2160	0.26	+1.1
1,052,086	-		GFF2160	0.26	+0.7
1,052,969	+		GFF2161	0.14	-0.2
1,052,970	-		GFF2161	0.14	-0.3
1,052,975	+		GFF2161	0.14	-0.3
1,052,975	+		GFF2161	0.14	-0.1
1,052,976	-		GFF2161	0.14	-0.3
1,052,976	-		GFF2161	0.14	-0.1
1,052,976	-		GFF2161	0.14	-0.2
1,052,976	-		GFF2161	0.14	-0.1
1,053,624	-		GFF2161	0.86	-1.3
1,053,624	-		GFF2161	0.86	+1.1
1,053,722	+				-0.1
1,053,723	-				-0.1
1,053,723	-				-0.2
1,053,723	-				+0.6
1,053,811	+				+0.5
1,053,957	-				-0.3
1,053,957	-				+0.1
1,054,186	+		GFF2162	0.26	+0.5
1,054,187	-		GFF2162	0.26	-2.4
1,054,234	+		GFF2162	0.32	+1.1
1,054,252	+		GFF2162	0.34	-0.5
1,054,252	+		GFF2162	0.34	+0.0
1,054,327	+		GFF2162	0.42	-0.0
1,054,328	-		GFF2162	0.42	-0.1