Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2100 and GFF2101 are separated by 3 nucleotides GFF2101 and GFF2102 are separated by 1 nucleotides GFF2102 and GFF2103 overlap by 4 nucleotides
GFF2100 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 988,363 to 989,079
GFF2100
GFF2101 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 989,083 to 989,958
GFF2101
GFF2102 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 989,960 to 991,042
GFF2102
GFF2103 - hypothetical protein, at 991,039 to 992,253
GFF2103
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -1
0
1 at 988.987 kb on + strand, within GFF2100 at 989.260 kb on + strand, within GFF2101 at 989.432 kb on - strand, within GFF2101 at 989.848 kb on + strand, within GFF2101 at 990.131 kb on + strand, within GFF2102 at 990.164 kb on + strand, within GFF2102 at 990.240 kb on - strand, within GFF2102 at 990.254 kb on + strand, within GFF2102 at 990.255 kb on - strand, within GFF2102 at 990.255 kb on - strand, within GFF2102 at 990.533 kb on + strand, within GFF2102 at 990.534 kb on - strand, within GFF2102 at 990.911 kb on + strand, within GFF2102 at 990.912 kb on - strand, within GFF2102 at 990.912 kb on - strand, within GFF2102 at 991.195 kb on + strand, within GFF2103 at 991.196 kb on - strand, within GFF2103 at 991.405 kb on + strand, within GFF2103 at 991.528 kb on + strand, within GFF2103 at 991.529 kb on - strand, within GFF2103 at 991.538 kb on - strand, within GFF2103 at 991.606 kb on + strand, within GFF2103 at 991.607 kb on - strand, within GFF2103 at 991.607 kb on - strand, within GFF2103 at 991.792 kb on + strand, within GFF2103 at 991.792 kb on + strand, within GFF2103 at 991.792 kb on + strand, within GFF2103 at 991.903 kb on + strand, within GFF2103 at 991.904 kb on - strand, within GFF2103 at 991.904 kb on - strand, within GFF2103 at 992.017 kb on + strand, within GFF2103 at 992.017 kb on + strand, within GFF2103 at 992.018 kb on - strand, within GFF2103 at 992.018 kb on - strand, within GFF2103 at 992.023 kb on + strand, within GFF2103
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 988,987 + GFF2100 0.87 +0.2 989,260 + GFF2101 0.20 +0.3 989,432 - GFF2101 0.40 +0.2 989,848 + GFF2101 0.87 -0.5 990,131 + GFF2102 0.16 +0.3 990,164 + GFF2102 0.19 +0.6 990,240 - GFF2102 0.26 -0.4 990,254 + GFF2102 0.27 -0.8 990,255 - GFF2102 0.27 -0.7 990,255 - GFF2102 0.27 -0.2 990,533 + GFF2102 0.53 +0.5 990,534 - GFF2102 0.53 +0.2 990,911 + GFF2102 0.88 +1.4 990,912 - GFF2102 0.88 +0.3 990,912 - GFF2102 0.88 +0.4 991,195 + GFF2103 0.13 +0.7 991,196 - GFF2103 0.13 -0.3 991,405 + GFF2103 0.30 -1.2 991,528 + GFF2103 0.40 +0.1 991,529 - GFF2103 0.40 -1.1 991,538 - GFF2103 0.41 -0.5 991,606 + GFF2103 0.47 -1.1 991,607 - GFF2103 0.47 +0.5 991,607 - GFF2103 0.47 +0.7 991,792 + GFF2103 0.62 +0.6 991,792 + GFF2103 0.62 -1.0 991,792 + GFF2103 0.62 -0.1 991,903 + GFF2103 0.71 +0.3 991,904 - GFF2103 0.71 -1.3 991,904 - GFF2103 0.71 +0.1 992,017 + GFF2103 0.80 +0.1 992,017 + GFF2103 0.80 +0.4 992,018 - GFF2103 0.81 -0.1 992,018 - GFF2103 0.81 -0.0 992,023 + GFF2103 0.81 +0.1
Or see this region's nucleotide sequence