Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2062 and GFF2063 are separated by 7 nucleotides GFF2063 and GFF2064 are separated by 126 nucleotides GFF2064 and GFF2065 overlap by 4 nucleotides
GFF2062 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6, at 943,586 to 944,980
GFF2062
GFF2063 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 944,988 to 945,668
GFF2063
GFF2064 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 945,795 to 947,168
GFF2064
GFF2065 - Malate dehydrogenase (EC 1.1.1.37), at 947,165 to 948,247
GFF2065
Position (kb) 945
946
947
948 Strain fitness (log2 ratio) -2
-1
0
1 at 944.819 kb on + strand, within GFF2062 at 944.820 kb on - strand, within GFF2062 at 944.897 kb on + strand at 944.898 kb on - strand at 944.898 kb on - strand at 944.973 kb on - strand at 944.973 kb on - strand at 944.990 kb on - strand at 945.187 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.487 kb on + strand, within GFF2063 at 945.488 kb on - strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.553 kb on + strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.554 kb on - strand, within GFF2063 at 945.730 kb on - strand at 945.731 kb on + strand at 945.731 kb on + strand at 945.732 kb on - strand at 945.732 kb on - strand at 946.542 kb on + strand, within GFF2064 at 946.543 kb on - strand, within GFF2064 at 946.578 kb on + strand, within GFF2064 at 946.578 kb on + strand, within GFF2064 at 946.579 kb on - strand, within GFF2064 at 947.166 kb on + strand at 947.166 kb on + strand at 947.650 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065 at 948.064 kb on - strand, within GFF2065
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 944,819 + GFF2062 0.88 +0.4 944,820 - GFF2062 0.88 +0.2 944,897 + +0.8 944,898 - -0.0 944,898 - -1.0 944,973 - +0.6 944,973 - +0.3 944,990 - -0.3 945,187 + GFF2063 0.29 +0.3 945,487 + GFF2063 0.73 -0.4 945,487 + GFF2063 0.73 +0.8 945,488 - GFF2063 0.73 -0.5 945,553 + GFF2063 0.83 +1.4 945,553 + GFF2063 0.83 +0.5 945,554 - GFF2063 0.83 -0.1 945,554 - GFF2063 0.83 +0.3 945,730 - -0.2 945,731 + +0.9 945,731 + +0.4 945,732 - -0.5 945,732 - -1.8 946,542 + GFF2064 0.54 -0.2 946,543 - GFF2064 0.54 +0.4 946,578 + GFF2064 0.57 +0.5 946,578 + GFF2064 0.57 -0.1 946,579 - GFF2064 0.57 -1.0 947,166 + -0.1 947,166 + -0.3 947,650 - GFF2065 0.45 +0.7 948,064 - GFF2065 0.83 -0.2 948,064 - GFF2065 0.83 -0.0 948,064 - GFF2065 0.83 +1.2
Or see this region's nucleotide sequence