Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1950

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
823,011	-		GFF1949	0.73	-1.3
823,580	+		GFF1950	0.24	+0.2
823,580	+		GFF1950	0.24	+0.1
823,581	-		GFF1950	0.24	+0.5
823,581	-		GFF1950	0.24	+0.5
823,581	-		GFF1950	0.24	+0.4
823,581	-		GFF1950	0.24	+1.2
823,581	-		GFF1950	0.24	-1.0
823,581	-		GFF1950	0.24	+0.2
823,581	-		GFF1950	0.24	-0.2
823,958	+		GFF1950	0.89	-0.3
823,958	+		GFF1950	0.89	+0.2
823,958	+		GFF1950	0.89	-0.5
823,958	+		GFF1950	0.89	+0.8
823,959	-		GFF1950	0.89	-0.2
823,959	-		GFF1950	0.89	+0.7
824,113	+				-0.0
824,113	+				-0.1
824,113	+				+1.1
824,113	+				-1.0
824,113	+				+0.7
824,114	-				+0.0
824,114	-				-0.8
824,114	-				-1.3
824,114	-				-0.1
824,114	-				+0.1
824,114	-				-1.0
824,114	-				-0.4
824,114	-				+0.9
824,114	-				+0.5
824,134	+		GFF1951	0.11	-1.0
824,170	+		GFF1951	0.15	+0.0
824,170	+		GFF1951	0.15	-0.5
824,170	+		GFF1951	0.15	-1.1
824,259	+		GFF1951	0.25	-0.3
824,259	+		GFF1951	0.25	+0.1
824,259	+		GFF1951	0.25	+0.1
824,259	+		GFF1951	0.25	-0.6
824,260	-		GFF1951	0.25	+1.1
824,260	-		GFF1951	0.25	-0.5
824,260	-		GFF1951	0.25	+1.2
824,260	-		GFF1951	0.25	-0.4
824,260	-		GFF1951	0.25	-0.3
824,510	+		GFF1951	0.51	-0.2
824,536	+		GFF1951	0.54	-0.1
824,537	-		GFF1951	0.54	+0.2
824,537	-		GFF1951	0.54	+1.0
824,537	-		GFF1951	0.54	-0.0
824,537	-		GFF1951	0.54	-1.3
824,662	+		GFF1951	0.67	+0.0
824,662	+		GFF1951	0.67	-0.8
824,663	-		GFF1951	0.67	-0.7
824,663	-		GFF1951	0.67	+0.2