Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1896 and GFF1897 are separated by 7 nucleotides GFF1897 and GFF1898 overlap by 4 nucleotides GFF1898 and GFF1899 overlap by 4 nucleotides
GFF1896 - transcriptional regulator, MerR family, at 761,147 to 762,124
GFF1896
GFF1897 - putative exported protein, at 762,132 to 763,118
GFF1897
GFF1898 - hypothetical protein, at 763,115 to 763,846
GFF1898
GFF1899 - L-threonine 3-dehydrogenase (EC 1.1.1.103), at 763,843 to 764,895
GFF1899
Position (kb) 762
763
764 Strain fitness (log2 ratio) -1
0
1 at 761.246 kb on + strand, within GFF1896 at 761.246 kb on + strand, within GFF1896 at 761.246 kb on + strand, within GFF1896 at 761.247 kb on - strand, within GFF1896 at 761.247 kb on - strand, within GFF1896 at 761.703 kb on - strand, within GFF1896 at 761.703 kb on - strand, within GFF1896 at 761.766 kb on - strand, within GFF1896 at 762.023 kb on + strand, within GFF1896 at 762.023 kb on + strand, within GFF1896 at 762.024 kb on - strand, within GFF1896 at 762.172 kb on + strand at 762.640 kb on + strand, within GFF1897 at 762.640 kb on + strand, within GFF1897 at 762.640 kb on + strand, within GFF1897 at 762.641 kb on - strand, within GFF1897 at 762.778 kb on + strand, within GFF1897 at 762.794 kb on - strand, within GFF1897 at 762.799 kb on + strand, within GFF1897 at 762.799 kb on + strand, within GFF1897 at 762.800 kb on - strand, within GFF1897 at 762.800 kb on - strand, within GFF1897 at 762.800 kb on - strand, within GFF1897 at 763.507 kb on - strand, within GFF1898 at 763.662 kb on + strand, within GFF1898 at 763.662 kb on + strand, within GFF1898 at 764.028 kb on - strand, within GFF1899 at 764.028 kb on - strand, within GFF1899
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 761,246 + GFF1896 0.10 -0.7 761,246 + GFF1896 0.10 +0.3 761,246 + GFF1896 0.10 -0.5 761,247 - GFF1896 0.10 +0.0 761,247 - GFF1896 0.10 +0.3 761,703 - GFF1896 0.57 +0.0 761,703 - GFF1896 0.57 +0.0 761,766 - GFF1896 0.63 -0.3 762,023 + GFF1896 0.90 +0.2 762,023 + GFF1896 0.90 -0.1 762,024 - GFF1896 0.90 -0.0 762,172 + -0.3 762,640 + GFF1897 0.51 +0.9 762,640 + GFF1897 0.51 +0.8 762,640 + GFF1897 0.51 -1.1 762,641 - GFF1897 0.52 +0.9 762,778 + GFF1897 0.65 -0.1 762,794 - GFF1897 0.67 +0.7 762,799 + GFF1897 0.68 -0.0 762,799 + GFF1897 0.68 -0.4 762,800 - GFF1897 0.68 -0.2 762,800 - GFF1897 0.68 +0.2 762,800 - GFF1897 0.68 +0.5 763,507 - GFF1898 0.54 +0.4 763,662 + GFF1898 0.75 +1.1 763,662 + GFF1898 0.75 +0.2 764,028 - GFF1899 0.18 -0.3 764,028 - GFF1899 0.18 -0.3
Or see this region's nucleotide sequence