Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1894 and GFF1895 are separated by 132 nucleotides GFF1895 and GFF1896 are separated by 86 nucleotides
GFF1894 - Choline dehydrogenase (EC 1.1.99.1), at 757,752 to 759,410
GFF1894
GFF1895 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 759,543 to 761,060
GFF1895
GFF1896 - transcriptional regulator, MerR family, at 761,147 to 762,124
GFF1896
Position (kb) 759
760
761
762 Strain fitness (log2 ratio) -1
0
1 at 758.752 kb on + strand, within GFF1894 at 758.753 kb on - strand, within GFF1894 at 758.753 kb on - strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.121 kb on + strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.122 kb on - strand, within GFF1894 at 759.217 kb on + strand, within GFF1894 at 759.218 kb on - strand, within GFF1894 at 759.250 kb on + strand at 759.251 kb on - strand at 759.257 kb on - strand at 759.283 kb on + strand at 759.284 kb on - strand at 759.388 kb on + strand at 759.456 kb on - strand at 759.544 kb on + strand at 759.544 kb on + strand at 759.545 kb on - strand at 759.545 kb on - strand at 759.589 kb on - strand at 759.625 kb on + strand at 759.626 kb on - strand at 759.901 kb on + strand, within GFF1895 at 759.901 kb on + strand, within GFF1895 at 760.046 kb on - strand, within GFF1895 at 760.229 kb on - strand, within GFF1895 at 760.348 kb on + strand, within GFF1895 at 760.348 kb on + strand, within GFF1895 at 760.349 kb on - strand, within GFF1895 at 760.978 kb on + strand at 760.978 kb on + strand at 760.978 kb on + strand at 760.978 kb on + strand at 760.979 kb on - strand at 760.979 kb on - strand at 760.979 kb on - strand at 761.126 kb on + strand at 761.126 kb on + strand at 761.246 kb on + strand, within GFF1896 at 761.246 kb on + strand, within GFF1896 at 761.246 kb on + strand, within GFF1896 at 761.247 kb on - strand, within GFF1896 at 761.247 kb on - strand, within GFF1896 at 761.703 kb on - strand, within GFF1896 at 761.703 kb on - strand, within GFF1896 at 761.766 kb on - strand, within GFF1896 at 762.023 kb on + strand, within GFF1896 at 762.023 kb on + strand, within GFF1896 at 762.024 kb on - strand, within GFF1896
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 758,752 + GFF1894 0.60 +0.1 758,753 - GFF1894 0.60 +0.9 758,753 - GFF1894 0.60 +0.6 759,121 + GFF1894 0.83 -1.3 759,121 + GFF1894 0.83 +0.5 759,121 + GFF1894 0.83 +0.4 759,121 + GFF1894 0.83 +0.1 759,121 + GFF1894 0.83 -0.1 759,121 + GFF1894 0.83 +0.1 759,122 - GFF1894 0.83 -0.8 759,122 - GFF1894 0.83 -0.8 759,122 - GFF1894 0.83 -1.0 759,217 + GFF1894 0.88 -0.1 759,218 - GFF1894 0.88 -0.1 759,250 + +0.6 759,251 - +0.2 759,257 - +1.1 759,283 + +0.0 759,284 - +0.2 759,388 + -0.3 759,456 - -0.1 759,544 + +0.1 759,544 + -0.3 759,545 - -0.1 759,545 - -0.5 759,589 - +0.1 759,625 + -0.2 759,626 - -0.1 759,901 + GFF1895 0.24 +0.4 759,901 + GFF1895 0.24 -0.4 760,046 - GFF1895 0.33 -0.2 760,229 - GFF1895 0.45 -0.5 760,348 + GFF1895 0.53 -0.2 760,348 + GFF1895 0.53 +0.9 760,349 - GFF1895 0.53 -1.1 760,978 + -0.5 760,978 + -0.3 760,978 + -0.2 760,978 + -0.3 760,979 - -0.4 760,979 - -1.3 760,979 - -1.1 761,126 + +0.2 761,126 + +0.3 761,246 + GFF1896 0.10 -0.7 761,246 + GFF1896 0.10 +0.3 761,246 + GFF1896 0.10 -0.5 761,247 - GFF1896 0.10 +0.0 761,247 - GFF1896 0.10 +0.3 761,703 - GFF1896 0.57 +0.0 761,703 - GFF1896 0.57 +0.0 761,766 - GFF1896 0.63 -0.3 762,023 + GFF1896 0.90 +0.2 762,023 + GFF1896 0.90 -0.1 762,024 - GFF1896 0.90 -0.0
Or see this region's nucleotide sequence