Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1773 and GFF1774 are separated by 28 nucleotides GFF1774 and GFF1775 are separated by 339 nucleotides
GFF1773 - SoxH protein, homolog, at 638,654 to 639,619
GFF1773
GFF1774 - hypothetical protein, at 639,648 to 640,067
GFF1774
GFF1775 - hypothetical protein, at 640,407 to 641,333
GFF1775
Position (kb) 639
640
641 Strain fitness (log2 ratio) -2
-1
0
1 at 638.780 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.783 kb on + strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.784 kb on - strand, within GFF1773 at 638.972 kb on + strand, within GFF1773 at 638.973 kb on - strand, within GFF1773 at 638.973 kb on - strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.990 kb on + strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 638.991 kb on - strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.053 kb on + strand, within GFF1773 at 639.054 kb on - strand, within GFF1773 at 639.177 kb on - strand, within GFF1773 at 639.440 kb on + strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.441 kb on - strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.506 kb on + strand, within GFF1773 at 639.507 kb on - strand, within GFF1773 at 639.575 kb on + strand at 639.575 kb on + strand at 639.576 kb on - strand at 639.576 kb on - strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.584 kb on + strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.585 kb on - strand at 639.618 kb on - strand at 639.618 kb on - strand at 639.725 kb on - strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 639.996 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.000 kb on + strand, within GFF1774 at 640.001 kb on - strand, within GFF1774 at 640.750 kb on - strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775 at 640.781 kb on + strand, within GFF1775
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 638,780 + GFF1773 0.13 +0.1 638,783 + GFF1773 0.13 -0.5 638,783 + GFF1773 0.13 +0.4 638,783 + GFF1773 0.13 -0.5 638,784 - GFF1773 0.13 -0.1 638,784 - GFF1773 0.13 -1.5 638,784 - GFF1773 0.13 -0.2 638,784 - GFF1773 0.13 +0.5 638,784 - GFF1773 0.13 +0.2 638,784 - GFF1773 0.13 -0.5 638,784 - GFF1773 0.13 -1.4 638,784 - GFF1773 0.13 -0.0 638,784 - GFF1773 0.13 -0.1 638,972 + GFF1773 0.33 -0.8 638,973 - GFF1773 0.33 +0.5 638,973 - GFF1773 0.33 -0.3 638,990 + GFF1773 0.35 -1.8 638,990 + GFF1773 0.35 -1.4 638,990 + GFF1773 0.35 +0.2 638,991 - GFF1773 0.35 +1.0 638,991 - GFF1773 0.35 +0.3 638,991 - GFF1773 0.35 -0.1 639,053 + GFF1773 0.41 -0.1 639,053 + GFF1773 0.41 +0.1 639,053 + GFF1773 0.41 +0.2 639,054 - GFF1773 0.41 -0.2 639,177 - GFF1773 0.54 -0.2 639,440 + GFF1773 0.81 +0.2 639,441 - GFF1773 0.81 +1.0 639,441 - GFF1773 0.81 +0.8 639,506 + GFF1773 0.88 -1.9 639,506 + GFF1773 0.88 -0.4 639,506 + GFF1773 0.88 -0.2 639,507 - GFF1773 0.88 -0.4 639,575 + -0.1 639,575 + +0.3 639,576 - -0.1 639,576 - -1.1 639,584 + +0.2 639,584 + +0.5 639,584 + +0.3 639,584 + +0.5 639,585 - -0.5 639,585 - -0.3 639,585 - -0.7 639,585 - +0.1 639,585 - -0.4 639,585 - +0.3 639,618 - +1.5 639,618 - -0.1 639,725 - GFF1774 0.18 +0.2 639,996 + GFF1774 0.83 +0.7 639,996 + GFF1774 0.83 -0.2 640,000 + GFF1774 0.84 +0.3 640,000 + GFF1774 0.84 +0.6 640,000 + GFF1774 0.84 -0.1 640,000 + GFF1774 0.84 +0.7 640,001 - GFF1774 0.84 +0.1 640,750 - GFF1775 0.37 +0.0 640,781 + GFF1775 0.40 +0.6 640,781 + GFF1775 0.40 -0.6 640,781 + GFF1775 0.40 +0.1
Or see this region's nucleotide sequence