Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1663 and GFF1664 are separated by 21 nucleotides
GFF1663 - Sporulation domain protein, at 516,768 to 517,829
GFF1663
GFF1664 - Sterol desaturase-related protein, at 517,851 to 519,716
GFF1664
Position (kb) 517
518
519
520 Strain fitness (log2 ratio) -1
0
1 at 517.481 kb on - strand, within GFF1663 at 517.612 kb on + strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.735 kb on + strand at 517.736 kb on - strand at 517.995 kb on + strand at 518.028 kb on + strand at 518.118 kb on + strand, within GFF1664 at 518.118 kb on + strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.131 kb on - strand, within GFF1664 at 518.206 kb on - strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.218 kb on - strand, within GFF1664 at 518.218 kb on - strand, within GFF1664 at 518.221 kb on - strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.355 kb on + strand, within GFF1664 at 518.355 kb on + strand, within GFF1664 at 518.424 kb on + strand, within GFF1664 at 518.529 kb on + strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.671 kb on - strand, within GFF1664 at 518.671 kb on - strand, within GFF1664 at 518.814 kb on + strand, within GFF1664 at 518.814 kb on + strand, within GFF1664 at 519.230 kb on - strand, within GFF1664 at 519.270 kb on + strand, within GFF1664 at 519.270 kb on + strand, within GFF1664 at 519.271 kb on - strand, within GFF1664 at 519.354 kb on + strand, within GFF1664 at 519.354 kb on + strand, within GFF1664 at 519.355 kb on - strand, within GFF1664 at 519.411 kb on + strand, within GFF1664 at 519.412 kb on - strand, within GFF1664 at 519.412 kb on - strand, within GFF1664 at 519.412 kb on - strand, within GFF1664 at 519.591 kb on + strand at 519.592 kb on - strand at 519.592 kb on - strand at 519.784 kb on - strand at 519.900 kb on - strand at 520.343 kb on + strand at 520.344 kb on - strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.464 kb on - strand at 520.592 kb on + strand at 520.592 kb on + strand at 520.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 517,481 - GFF1663 0.67 -0.3 517,612 + GFF1663 0.79 +0.1 517,613 - GFF1663 0.80 -0.2 517,613 - GFF1663 0.80 -0.7 517,735 + +0.2 517,736 - +0.3 517,995 + -0.2 518,028 + -0.4 518,118 + GFF1664 0.14 -0.2 518,118 + GFF1664 0.14 +0.5 518,119 - GFF1664 0.14 -0.3 518,119 - GFF1664 0.14 +1.0 518,119 - GFF1664 0.14 -0.1 518,131 - GFF1664 0.15 +0.7 518,206 - GFF1664 0.19 -0.9 518,217 + GFF1664 0.20 -0.0 518,217 + GFF1664 0.20 -0.2 518,217 + GFF1664 0.20 -1.5 518,218 - GFF1664 0.20 +0.2 518,218 - GFF1664 0.20 -0.2 518,221 - GFF1664 0.20 +0.9 518,295 + GFF1664 0.24 +1.5 518,295 + GFF1664 0.24 +0.5 518,295 + GFF1664 0.24 -0.5 518,295 + GFF1664 0.24 -0.1 518,295 + GFF1664 0.24 +0.5 518,295 + GFF1664 0.24 -1.6 518,295 + GFF1664 0.24 -1.5 518,296 - GFF1664 0.24 +0.6 518,296 - GFF1664 0.24 +1.7 518,296 - GFF1664 0.24 +0.3 518,296 - GFF1664 0.24 +0.2 518,296 - GFF1664 0.24 -1.6 518,296 - GFF1664 0.24 +0.6 518,355 + GFF1664 0.27 -0.4 518,355 + GFF1664 0.27 +0.1 518,424 + GFF1664 0.31 +0.3 518,529 + GFF1664 0.36 -0.6 518,545 - GFF1664 0.37 +0.1 518,545 - GFF1664 0.37 -0.5 518,545 - GFF1664 0.37 +0.0 518,613 + GFF1664 0.41 -0.1 518,613 + GFF1664 0.41 +0.2 518,613 + GFF1664 0.41 +0.0 518,671 - GFF1664 0.44 +1.7 518,671 - GFF1664 0.44 -0.7 518,814 + GFF1664 0.52 +0.0 518,814 + GFF1664 0.52 +0.5 519,230 - GFF1664 0.74 -0.3 519,270 + GFF1664 0.76 -0.6 519,270 + GFF1664 0.76 -0.1 519,271 - GFF1664 0.76 +0.3 519,354 + GFF1664 0.81 +0.4 519,354 + GFF1664 0.81 -0.4 519,355 - GFF1664 0.81 -0.5 519,411 + GFF1664 0.84 -1.7 519,412 - GFF1664 0.84 +0.9 519,412 - GFF1664 0.84 -0.4 519,412 - GFF1664 0.84 +1.1 519,591 + +0.1 519,592 - -0.1 519,592 - -0.1 519,784 - +0.3 519,900 - -0.4 520,343 + -0.6 520,344 - +0.7 520,463 + -0.3 520,463 + -0.2 520,463 + +0.1 520,464 - +0.3 520,592 + +0.5 520,592 + +0.1 520,593 - -0.5
Or see this region's nucleotide sequence