Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1662 and GFF1663 are separated by 14 nucleotides GFF1663 and GFF1664 are separated by 21 nucleotides
GFF1662 - low-specificity D-threonine aldolase, at 515,569 to 516,753
GFF1662
GFF1663 - Sporulation domain protein, at 516,768 to 517,829
GFF1663
GFF1664 - Sterol desaturase-related protein, at 517,851 to 519,716
GFF1664
Position (kb) 516
517
518 Strain fitness (log2 ratio) -1
0
1 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.869 kb on + strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 515.870 kb on - strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.157 kb on + strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.158 kb on - strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.355 kb on + strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 516.356 kb on - strand, within GFF1662 at 517.481 kb on - strand, within GFF1663 at 517.612 kb on + strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.613 kb on - strand, within GFF1663 at 517.735 kb on + strand at 517.736 kb on - strand at 517.995 kb on + strand at 518.028 kb on + strand at 518.118 kb on + strand, within GFF1664 at 518.118 kb on + strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.119 kb on - strand, within GFF1664 at 518.131 kb on - strand, within GFF1664 at 518.206 kb on - strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.217 kb on + strand, within GFF1664 at 518.218 kb on - strand, within GFF1664 at 518.218 kb on - strand, within GFF1664 at 518.221 kb on - strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.295 kb on + strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.296 kb on - strand, within GFF1664 at 518.355 kb on + strand, within GFF1664 at 518.355 kb on + strand, within GFF1664 at 518.424 kb on + strand, within GFF1664 at 518.529 kb on + strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.545 kb on - strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.613 kb on + strand, within GFF1664 at 518.671 kb on - strand, within GFF1664 at 518.671 kb on - strand, within GFF1664 at 518.814 kb on + strand, within GFF1664 at 518.814 kb on + strand, within GFF1664
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 515,869 + GFF1662 0.25 +1.5 515,869 + GFF1662 0.25 +0.3 515,869 + GFF1662 0.25 -0.4 515,869 + GFF1662 0.25 +0.1 515,869 + GFF1662 0.25 +0.9 515,869 + GFF1662 0.25 -0.5 515,869 + GFF1662 0.25 +0.2 515,869 + GFF1662 0.25 +0.0 515,869 + GFF1662 0.25 +0.5 515,869 + GFF1662 0.25 +0.0 515,869 + GFF1662 0.25 -0.2 515,869 + GFF1662 0.25 -1.7 515,869 + GFF1662 0.25 -0.0 515,870 - GFF1662 0.25 +0.5 515,870 - GFF1662 0.25 +0.2 515,870 - GFF1662 0.25 -0.3 515,870 - GFF1662 0.25 -0.2 515,870 - GFF1662 0.25 -0.1 515,870 - GFF1662 0.25 +0.5 515,870 - GFF1662 0.25 +0.8 515,870 - GFF1662 0.25 +0.4 516,157 + GFF1662 0.50 -1.2 516,157 + GFF1662 0.50 +0.5 516,157 + GFF1662 0.50 +0.4 516,158 - GFF1662 0.50 +0.1 516,158 - GFF1662 0.50 +1.1 516,158 - GFF1662 0.50 +0.5 516,355 + GFF1662 0.66 +1.1 516,355 + GFF1662 0.66 +0.0 516,355 + GFF1662 0.66 -0.4 516,355 + GFF1662 0.66 +1.0 516,355 + GFF1662 0.66 -0.2 516,356 - GFF1662 0.66 +0.5 516,356 - GFF1662 0.66 -1.3 516,356 - GFF1662 0.66 +0.3 517,481 - GFF1663 0.67 -0.3 517,612 + GFF1663 0.79 +0.1 517,613 - GFF1663 0.80 -0.2 517,613 - GFF1663 0.80 -0.7 517,735 + +0.2 517,736 - +0.3 517,995 + -0.2 518,028 + -0.4 518,118 + GFF1664 0.14 -0.2 518,118 + GFF1664 0.14 +0.5 518,119 - GFF1664 0.14 -0.3 518,119 - GFF1664 0.14 +1.0 518,119 - GFF1664 0.14 -0.1 518,131 - GFF1664 0.15 +0.7 518,206 - GFF1664 0.19 -0.9 518,217 + GFF1664 0.20 -0.0 518,217 + GFF1664 0.20 -0.2 518,217 + GFF1664 0.20 -1.5 518,218 - GFF1664 0.20 +0.2 518,218 - GFF1664 0.20 -0.2 518,221 - GFF1664 0.20 +0.9 518,295 + GFF1664 0.24 +1.5 518,295 + GFF1664 0.24 +0.5 518,295 + GFF1664 0.24 -0.5 518,295 + GFF1664 0.24 -0.1 518,295 + GFF1664 0.24 +0.5 518,295 + GFF1664 0.24 -1.6 518,295 + GFF1664 0.24 -1.5 518,296 - GFF1664 0.24 +0.6 518,296 - GFF1664 0.24 +1.7 518,296 - GFF1664 0.24 +0.3 518,296 - GFF1664 0.24 +0.2 518,296 - GFF1664 0.24 -1.6 518,296 - GFF1664 0.24 +0.6 518,355 + GFF1664 0.27 -0.4 518,355 + GFF1664 0.27 +0.1 518,424 + GFF1664 0.31 +0.3 518,529 + GFF1664 0.36 -0.6 518,545 - GFF1664 0.37 +0.1 518,545 - GFF1664 0.37 -0.5 518,545 - GFF1664 0.37 +0.0 518,613 + GFF1664 0.41 -0.1 518,613 + GFF1664 0.41 +0.2 518,613 + GFF1664 0.41 +0.0 518,671 - GFF1664 0.44 +1.7 518,671 - GFF1664 0.44 -0.7 518,814 + GFF1664 0.52 +0.0 518,814 + GFF1664 0.52 +0.5
Or see this region's nucleotide sequence