Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1644 and GFF1645 are separated by 272 nucleotides GFF1645 and GFF1646 are separated by 11 nucleotides
GFF1644 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 499,380 to 500,321
GFF1644
GFF1645 - blr3303; putative recemase, at 500,594 to 501,781
GFF1645
GFF1646 - Probable racemase, at 501,793 to 502,992
GFF1646
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1 at 499.862 kb on - strand, within GFF1644 at 499.894 kb on + strand, within GFF1644 at 500.285 kb on - strand at 500.285 kb on - strand at 500.355 kb on + strand at 500.400 kb on + strand at 500.401 kb on - strand at 500.402 kb on + strand at 500.413 kb on + strand at 500.413 kb on + strand at 500.450 kb on - strand at 500.450 kb on - strand at 500.464 kb on + strand at 500.482 kb on + strand at 500.483 kb on - strand at 500.949 kb on - strand, within GFF1645 at 500.966 kb on + strand, within GFF1645 at 500.966 kb on + strand, within GFF1645 at 501.534 kb on - strand, within GFF1645 at 501.811 kb on + strand at 501.860 kb on - strand at 502.340 kb on - strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.432 kb on + strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.433 kb on - strand, within GFF1646 at 502.435 kb on + strand, within GFF1646 at 502.492 kb on + strand, within GFF1646 at 502.738 kb on + strand, within GFF1646 at 502.738 kb on + strand, within GFF1646 at 502.739 kb on - strand, within GFF1646
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 499,862 - GFF1644 0.51 -0.0 499,894 + GFF1644 0.55 -0.1 500,285 - -0.3 500,285 - +0.1 500,355 + -0.6 500,400 + -0.1 500,401 - +0.2 500,402 + -0.8 500,413 + -0.1 500,413 + +0.4 500,450 - +0.7 500,450 - +0.6 500,464 + +1.2 500,482 + -0.0 500,483 - +0.5 500,949 - GFF1645 0.30 -1.9 500,966 + GFF1645 0.31 +0.1 500,966 + GFF1645 0.31 -0.3 501,534 - GFF1645 0.79 -0.5 501,811 + -0.2 501,860 - +1.5 502,340 - GFF1646 0.46 -0.4 502,432 + GFF1646 0.53 +0.0 502,432 + GFF1646 0.53 -0.3 502,432 + GFF1646 0.53 -0.5 502,433 - GFF1646 0.53 -0.4 502,433 - GFF1646 0.53 +0.7 502,433 - GFF1646 0.53 -0.0 502,435 + GFF1646 0.54 +0.8 502,492 + GFF1646 0.58 +0.9 502,738 + GFF1646 0.79 -0.2 502,738 + GFF1646 0.79 +0.5 502,739 - GFF1646 0.79 +0.0
Or see this region's nucleotide sequence