Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1558 and GFF1559 overlap by 4 nucleotides GFF1559 and GFF1560 are separated by 41 nucleotides GFF1560 and GFF1561 are separated by 2 nucleotides GFF1561 and GFF1562 are separated by 1 nucleotides
GFF1558 - FIG00954108: hypothetical protein, at 413,863 to 414,441
GFF1558
GFF1559 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 414,438 to 415,220
GFF1559
GFF1560 - Fumarylacetoacetate hydrolase family protein, at 415,262 to 416,236
GFF1560
GFF1561 - hypothetical protein, at 416,239 to 417,192
GFF1561
GFF1562 - hypothetical protein, at 417,194 to 417,643
GFF1562
Position (kb) 415
416
417 Strain fitness (log2 ratio) -1
0
1 at 414.872 kb on - strand, within GFF1559 at 414.872 kb on - strand, within GFF1559 at 414.921 kb on + strand, within GFF1559 at 414.921 kb on + strand, within GFF1559 at 414.922 kb on - strand, within GFF1559 at 415.418 kb on + strand, within GFF1560 at 415.419 kb on - strand, within GFF1560 at 415.602 kb on - strand, within GFF1560 at 416.282 kb on + strand at 416.491 kb on + strand, within GFF1561 at 416.590 kb on + strand, within GFF1561 at 416.591 kb on - strand, within GFF1561 at 416.671 kb on + strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 416.672 kb on - strand, within GFF1561 at 417.053 kb on - strand, within GFF1561 at 417.195 kb on + strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.196 kb on - strand at 417.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 414,872 - GFF1559 0.55 +0.1 414,872 - GFF1559 0.55 -0.4 414,921 + GFF1559 0.62 +0.2 414,921 + GFF1559 0.62 +0.0 414,922 - GFF1559 0.62 -0.7 415,418 + GFF1560 0.16 +0.3 415,419 - GFF1560 0.16 -0.8 415,602 - GFF1560 0.35 +0.5 416,282 + -0.4 416,491 + GFF1561 0.26 -1.1 416,590 + GFF1561 0.37 -0.8 416,591 - GFF1561 0.37 -1.7 416,671 + GFF1561 0.45 +0.0 416,672 - GFF1561 0.45 +0.1 416,672 - GFF1561 0.45 +0.3 416,672 - GFF1561 0.45 -1.3 417,053 - GFF1561 0.85 -0.3 417,195 + +0.3 417,196 - -0.0 417,196 - -0.6 417,196 - +0.9 417,199 - -0.2
Or see this region's nucleotide sequence