Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1555 and GFF1556 are separated by 13 nucleotides GFF1556 and GFF1557 are separated by 31 nucleotides
GFF1555 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 410,344 to 411,363
GFF1555
GFF1556 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 411,377 to 412,846
GFF1556
GFF1557 - Tricarboxylate transport protein TctC, at 412,878 to 413,852
GFF1557
Position (kb) 411
412
413 Strain fitness (log2 ratio) -1
0
1
2
3 at 410.425 kb on + strand at 410.425 kb on + strand at 410.497 kb on + strand, within GFF1555 at 410.503 kb on + strand, within GFF1555 at 410.504 kb on - strand, within GFF1555 at 410.729 kb on - strand, within GFF1555 at 410.926 kb on + strand, within GFF1555 at 410.927 kb on - strand, within GFF1555 at 411.049 kb on + strand, within GFF1555 at 411.157 kb on + strand, within GFF1555 at 411.199 kb on + strand, within GFF1555 at 411.200 kb on - strand, within GFF1555 at 411.338 kb on - strand at 411.338 kb on - strand at 411.714 kb on - strand, within GFF1556 at 412.041 kb on + strand, within GFF1556 at 412.814 kb on + strand at 412.814 kb on + strand at 412.854 kb on + strand at 412.854 kb on + strand at 413.172 kb on + strand, within GFF1557 at 413.208 kb on + strand, within GFF1557 at 413.208 kb on + strand, within GFF1557 at 413.253 kb on + strand, within GFF1557 at 413.254 kb on - strand, within GFF1557 at 413.254 kb on - strand, within GFF1557 at 413.300 kb on + strand, within GFF1557 at 413.347 kb on - strand, within GFF1557 at 413.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 410,425 + +0.2 410,425 + +0.1 410,497 + GFF1555 0.15 -0.1 410,503 + GFF1555 0.16 -0.3 410,504 - GFF1555 0.16 -0.1 410,729 - GFF1555 0.38 -0.3 410,926 + GFF1555 0.57 +0.1 410,927 - GFF1555 0.57 +1.2 411,049 + GFF1555 0.69 +0.3 411,157 + GFF1555 0.80 +0.1 411,199 + GFF1555 0.84 +0.9 411,200 - GFF1555 0.84 +0.4 411,338 - -0.1 411,338 - +0.0 411,714 - GFF1556 0.23 +0.6 412,041 + GFF1556 0.45 -0.5 412,814 + -0.4 412,814 + +0.2 412,854 + -0.7 412,854 + -0.4 413,172 + GFF1557 0.30 +3.0 413,208 + GFF1557 0.34 +0.3 413,208 + GFF1557 0.34 -0.6 413,253 + GFF1557 0.38 -0.5 413,254 - GFF1557 0.39 -0.5 413,254 - GFF1557 0.39 -0.8 413,300 + GFF1557 0.43 +0.3 413,347 - GFF1557 0.48 +0.8 413,808 + -0.2
Or see this region's nucleotide sequence