Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1546 and GFF1547 are separated by 27 nucleotides GFF1547 and GFF1548 are separated by 35 nucleotides
GFF1546 - FIG00960493: hypothetical protein, at 400,977 to 402,314
GFF1546
GFF1547 - Tricarboxylate transport protein TctC, at 402,342 to 403,316
GFF1547
GFF1548 - hypothetical protein, at 403,352 to 404,497
GFF1548
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1 at 401.725 kb on + strand, within GFF1546 at 402.037 kb on + strand, within GFF1546 at 402.037 kb on + strand, within GFF1546 at 402.037 kb on + strand, within GFF1546 at 402.038 kb on - strand, within GFF1546 at 402.314 kb on + strand at 402.315 kb on - strand at 402.526 kb on + strand, within GFF1547 at 402.679 kb on + strand, within GFF1547 at 402.758 kb on - strand, within GFF1547 at 402.938 kb on - strand, within GFF1547 at 402.938 kb on - strand, within GFF1547 at 402.982 kb on + strand, within GFF1547 at 402.982 kb on + strand, within GFF1547 at 402.983 kb on - strand, within GFF1547 at 403.330 kb on + strand at 403.401 kb on + strand at 403.402 kb on - strand at 403.402 kb on - strand at 403.647 kb on + strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.648 kb on - strand, within GFF1548 at 403.725 kb on + strand, within GFF1548 at 403.725 kb on + strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.726 kb on - strand, within GFF1548 at 403.744 kb on - strand, within GFF1548 at 403.869 kb on + strand, within GFF1548
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 401,725 + GFF1546 0.56 -0.8 402,037 + GFF1546 0.79 +0.1 402,037 + GFF1546 0.79 -0.2 402,037 + GFF1546 0.79 +0.3 402,038 - GFF1546 0.79 -0.1 402,314 + -0.1 402,315 - +0.2 402,526 + GFF1547 0.19 -0.1 402,679 + GFF1547 0.35 +0.0 402,758 - GFF1547 0.43 +0.4 402,938 - GFF1547 0.61 -0.1 402,938 - GFF1547 0.61 +0.4 402,982 + GFF1547 0.66 -1.4 402,982 + GFF1547 0.66 +0.1 402,983 - GFF1547 0.66 -0.1 403,330 + -0.3 403,401 + -0.7 403,402 - -0.4 403,402 - -0.2 403,647 + GFF1548 0.26 -0.1 403,648 - GFF1548 0.26 -0.4 403,648 - GFF1548 0.26 +0.8 403,648 - GFF1548 0.26 -0.9 403,648 - GFF1548 0.26 +0.0 403,725 + GFF1548 0.33 -1.6 403,725 + GFF1548 0.33 +0.7 403,726 - GFF1548 0.33 +0.2 403,726 - GFF1548 0.33 +0.7 403,726 - GFF1548 0.33 -0.4 403,726 - GFF1548 0.33 -0.1 403,726 - GFF1548 0.33 -0.2 403,744 - GFF1548 0.34 -0.0 403,869 + GFF1548 0.45 +0.2
Or see this region's nucleotide sequence