Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1433 and GFF1434 are separated by 140 nucleotides GFF1434 and GFF1435 are separated by 12 nucleotides GFF1435 and GFF1436 are separated by 47 nucleotides
GFF1433 - hypothetical protein, at 289,015 to 290,508
GFF1433
GFF1434 - Chemotaxis response - phosphatase CheZ, at 290,649 to 291,275
GFF1434
GFF1435 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 291,288 to 291,674
GFF1435
GFF1436 - Flagellar motor rotation protein MotB, at 291,722 to 292,795
GFF1436
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1
2 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.730 kb on + strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.731 kb on - strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.742 kb on + strand, within GFF1433 at 289.823 kb on + strand, within GFF1433 at 289.824 kb on - strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.838 kb on + strand, within GFF1433 at 289.839 kb on - strand, within GFF1433 at 289.839 kb on - strand, within GFF1433 at 289.979 kb on + strand, within GFF1433 at 289.979 kb on + strand, within GFF1433 at 289.980 kb on - strand, within GFF1433 at 289.980 kb on - strand, within GFF1433 at 290.048 kb on + strand, within GFF1433 at 290.049 kb on - strand, within GFF1433 at 290.049 kb on - strand, within GFF1433 at 290.057 kb on + strand, within GFF1433 at 290.058 kb on - strand, within GFF1433 at 290.127 kb on - strand, within GFF1433 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.112 kb on + strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.113 kb on - strand, within GFF1434 at 291.172 kb on + strand, within GFF1434 at 291.362 kb on - strand, within GFF1435 at 292.156 kb on - strand, within GFF1436 at 292.245 kb on + strand, within GFF1436 at 292.246 kb on - strand, within GFF1436 at 292.246 kb on - strand, within GFF1436
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 289,730 + GFF1433 0.48 -0.0 289,730 + GFF1433 0.48 -0.1 289,730 + GFF1433 0.48 -0.3 289,731 - GFF1433 0.48 -0.3 289,731 - GFF1433 0.48 -0.4 289,731 - GFF1433 0.48 -0.7 289,731 - GFF1433 0.48 +0.1 289,742 + GFF1433 0.49 +2.5 289,742 + GFF1433 0.49 +0.3 289,742 + GFF1433 0.49 -0.4 289,823 + GFF1433 0.54 -0.0 289,824 - GFF1433 0.54 -0.3 289,838 + GFF1433 0.55 +0.1 289,838 + GFF1433 0.55 +0.3 289,838 + GFF1433 0.55 +0.3 289,838 + GFF1433 0.55 -0.0 289,839 - GFF1433 0.55 -0.4 289,839 - GFF1433 0.55 +0.4 289,979 + GFF1433 0.65 +0.1 289,979 + GFF1433 0.65 -0.0 289,980 - GFF1433 0.65 -0.0 289,980 - GFF1433 0.65 -0.1 290,048 + GFF1433 0.69 +0.1 290,049 - GFF1433 0.69 -0.5 290,049 - GFF1433 0.69 +1.5 290,057 + GFF1433 0.70 -0.9 290,058 - GFF1433 0.70 -0.0 290,127 - GFF1433 0.74 -0.4 291,112 + GFF1434 0.74 +0.1 291,112 + GFF1434 0.74 +0.5 291,112 + GFF1434 0.74 -0.9 291,112 + GFF1434 0.74 +0.4 291,112 + GFF1434 0.74 +0.3 291,112 + GFF1434 0.74 -1.4 291,112 + GFF1434 0.74 -0.0 291,113 - GFF1434 0.74 +0.1 291,113 - GFF1434 0.74 +0.5 291,172 + GFF1434 0.83 +0.3 291,362 - GFF1435 0.19 +0.3 292,156 - GFF1436 0.40 -0.3 292,245 + GFF1436 0.49 +0.1 292,246 - GFF1436 0.49 +0.1 292,246 - GFF1436 0.49 +0.2
Or see this region's nucleotide sequence