Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1409 and GFF1410 are separated by 9 nucleotides GFF1410 and GFF1411 are separated by 26 nucleotides GFF1411 and GFF1412 are separated by 37 nucleotides
GFF1409 - Flagellar L-ring protein FlgH, at 271,489 to 272,184
GFF1409
GFF1410 - Flagellar basal-body rod protein FlgG, at 272,194 to 272,976
GFF1410
GFF1411 - Flagellar basal-body rod protein FlgF, at 273,003 to 273,740
GFF1411
GFF1412 - Flagellar hook protein FlgE, at 273,778 to 274,992
GFF1412
Position (kb) 273
274 Strain fitness (log2 ratio) -1
0
1
2 at 272.004 kb on - strand, within GFF1409 at 272.078 kb on + strand, within GFF1409 at 272.259 kb on - strand at 272.324 kb on + strand, within GFF1410 at 272.324 kb on + strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.397 kb on - strand, within GFF1410 at 272.560 kb on - strand, within GFF1410 at 272.637 kb on - strand, within GFF1410 at 272.840 kb on + strand, within GFF1410 at 272.840 kb on + strand, within GFF1410 at 272.841 kb on - strand, within GFF1410 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.482 kb on - strand, within GFF1411 at 273.692 kb on - strand at 273.724 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 274.079 kb on + strand, within GFF1412 at 274.079 kb on + strand, within GFF1412 at 274.079 kb on + strand, within GFF1412 at 274.080 kb on - strand, within GFF1412 at 274.181 kb on + strand, within GFF1412 at 274.181 kb on + strand, within GFF1412 at 274.352 kb on + strand, within GFF1412 at 274.424 kb on + strand, within GFF1412 at 274.445 kb on + strand, within GFF1412
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 272,004 - GFF1409 0.74 -0.0 272,078 + GFF1409 0.85 -0.7 272,259 - +0.1 272,324 + GFF1410 0.17 -0.6 272,324 + GFF1410 0.17 +0.1 272,325 - GFF1410 0.17 -1.2 272,325 - GFF1410 0.17 +1.0 272,397 - GFF1410 0.26 +0.2 272,560 - GFF1410 0.47 -0.4 272,637 - GFF1410 0.57 -0.4 272,840 + GFF1410 0.83 +0.3 272,840 + GFF1410 0.83 -1.4 272,841 - GFF1410 0.83 +0.3 273,445 + GFF1411 0.60 +0.8 273,445 + GFF1411 0.60 -0.2 273,445 + GFF1411 0.60 +0.6 273,482 - GFF1411 0.65 +1.9 273,692 - +0.3 273,724 + -1.4 273,845 + +0.7 273,845 + -0.9 273,845 + +0.5 274,079 + GFF1412 0.25 +0.2 274,079 + GFF1412 0.25 -0.1 274,079 + GFF1412 0.25 -0.1 274,080 - GFF1412 0.25 +0.4 274,181 + GFF1412 0.33 -0.5 274,181 + GFF1412 0.33 -0.2 274,352 + GFF1412 0.47 -0.3 274,424 + GFF1412 0.53 +0.1 274,445 + GFF1412 0.55 -0.3
Or see this region's nucleotide sequence