Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1319 and GFF1320 are separated by 118 nucleotides GFF1320 and GFF1321 are separated by 3 nucleotides GFF1321 and GFF1322 are separated by 119 nucleotides GFF1322 and GFF1323 are separated by 113 nucleotides
GFF1319 - ABC-type multidrug transport system, ATPase component, at 169,035 to 169,973
GFF1319
GFF1320 - Sulfate transporter/antisigma-factor antagonist STAS, at 170,092 to 170,364
GFF1320
GFF1321 - Uncharacterized ABC transporter, auxiliary component YrbC, at 170,368 to 171,000
GFF1321
GFF1322 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 171,120 to 171,860
GFF1322
GFF1323 - Uncharacterized ABC transporter, periplasmic component YrbD, at 171,974 to 172,462
GFF1323
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.387 kb on + strand, within GFF1319 at 169.387 kb on + strand, within GFF1319 at 169.388 kb on - strand, within GFF1319 at 169.751 kb on - strand, within GFF1319 at 169.936 kb on + strand at 169.937 kb on - strand at 169.937 kb on - strand at 169.937 kb on - strand at 170.045 kb on + strand at 170.045 kb on + strand at 170.046 kb on - strand at 170.046 kb on - strand at 170.046 kb on - strand at 170.121 kb on - strand, within GFF1320 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.510 kb on + strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.511 kb on - strand, within GFF1321 at 170.546 kb on + strand, within GFF1321 at 170.601 kb on - strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.675 kb on + strand, within GFF1321 at 170.676 kb on - strand, within GFF1321 at 170.676 kb on - strand, within GFF1321 at 170.676 kb on - strand, within GFF1321 at 170.676 kb on - strand, within GFF1321 at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.047 kb on + strand at 171.048 kb on - strand at 171.048 kb on - strand at 171.048 kb on - strand at 171.103 kb on + strand at 171.104 kb on - strand at 171.194 kb on - strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.214 kb on + strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.215 kb on - strand, within GFF1322 at 171.218 kb on + strand, within GFF1322 at 171.218 kb on + strand, within GFF1322 at 171.219 kb on - strand, within GFF1322 at 171.219 kb on - strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.409 kb on + strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.410 kb on - strand, within GFF1322 at 171.664 kb on + strand, within GFF1322 at 171.664 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.718 kb on + strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.719 kb on - strand, within GFF1322 at 171.902 kb on + strand at 171.902 kb on + strand at 171.902 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.915 kb on + strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.916 kb on - strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.937 kb on + strand at 171.938 kb on - strand at 171.938 kb on - strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.975 kb on + strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand at 171.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 169,387 + GFF1319 0.37 -1.3 169,387 + GFF1319 0.37 -0.7 169,388 - GFF1319 0.38 -0.2 169,751 - GFF1319 0.76 -0.9 169,936 + -0.2 169,937 - -0.9 169,937 - -1.5 169,937 - -1.7 170,045 + +0.5 170,045 + -0.5 170,046 - +0.3 170,046 - -0.4 170,046 - -1.0 170,121 - GFF1320 0.11 -1.1 170,510 + GFF1321 0.22 -2.0 170,510 + GFF1321 0.22 -1.8 170,510 + GFF1321 0.22 -0.4 170,510 + GFF1321 0.22 -1.7 170,510 + GFF1321 0.22 -1.2 170,510 + GFF1321 0.22 -0.9 170,510 + GFF1321 0.22 -0.8 170,510 + GFF1321 0.22 -2.5 170,510 + GFF1321 0.22 -0.8 170,510 + GFF1321 0.22 -1.9 170,510 + GFF1321 0.22 -0.8 170,510 + GFF1321 0.22 -1.3 170,510 + GFF1321 0.22 -0.9 170,511 - GFF1321 0.23 -1.8 170,511 - GFF1321 0.23 -0.7 170,511 - GFF1321 0.23 -1.6 170,511 - GFF1321 0.23 -1.7 170,511 - GFF1321 0.23 -1.2 170,511 - GFF1321 0.23 -0.8 170,511 - GFF1321 0.23 -1.2 170,511 - GFF1321 0.23 -1.0 170,546 + GFF1321 0.28 -0.6 170,601 - GFF1321 0.37 -1.2 170,675 + GFF1321 0.48 -2.0 170,675 + GFF1321 0.48 -1.5 170,675 + GFF1321 0.48 -0.7 170,675 + GFF1321 0.48 -1.6 170,675 + GFF1321 0.48 -2.0 170,675 + GFF1321 0.48 -0.3 170,675 + GFF1321 0.48 -1.7 170,675 + GFF1321 0.48 -1.0 170,676 - GFF1321 0.49 -1.6 170,676 - GFF1321 0.49 +0.0 170,676 - GFF1321 0.49 -1.0 170,676 - GFF1321 0.49 +0.0 171,047 + +0.2 171,047 + +0.1 171,047 + +2.4 171,047 + +0.0 171,047 + -0.4 171,047 + +0.3 171,048 - +0.1 171,048 - +0.3 171,048 - +0.3 171,103 + -0.1 171,104 - -0.2 171,194 - GFF1322 0.10 -2.1 171,214 + GFF1322 0.13 -0.8 171,214 + GFF1322 0.13 -0.9 171,214 + GFF1322 0.13 -2.4 171,215 - GFF1322 0.13 -1.3 171,215 - GFF1322 0.13 +0.4 171,215 - GFF1322 0.13 -0.4 171,215 - GFF1322 0.13 -1.3 171,215 - GFF1322 0.13 -1.1 171,215 - GFF1322 0.13 -0.6 171,215 - GFF1322 0.13 -1.8 171,215 - GFF1322 0.13 -0.1 171,215 - GFF1322 0.13 -1.3 171,218 + GFF1322 0.13 -0.4 171,218 + GFF1322 0.13 -0.3 171,219 - GFF1322 0.13 -0.5 171,219 - GFF1322 0.13 -1.0 171,409 + GFF1322 0.39 -0.8 171,409 + GFF1322 0.39 -1.3 171,409 + GFF1322 0.39 -2.2 171,409 + GFF1322 0.39 -1.1 171,409 + GFF1322 0.39 +0.3 171,409 + GFF1322 0.39 -0.8 171,409 + GFF1322 0.39 -1.4 171,409 + GFF1322 0.39 -1.4 171,409 + GFF1322 0.39 -1.7 171,410 - GFF1322 0.39 -1.3 171,410 - GFF1322 0.39 -1.2 171,410 - GFF1322 0.39 -1.3 171,410 - GFF1322 0.39 -1.6 171,410 - GFF1322 0.39 -1.0 171,410 - GFF1322 0.39 -1.4 171,664 + GFF1322 0.73 -2.3 171,664 + GFF1322 0.73 -1.1 171,718 + GFF1322 0.81 -1.4 171,718 + GFF1322 0.81 -2.6 171,719 - GFF1322 0.81 -0.9 171,719 - GFF1322 0.81 -1.7 171,719 - GFF1322 0.81 -1.6 171,902 + +0.3 171,902 + +0.6 171,902 + +0.0 171,915 + +0.6 171,915 + +0.0 171,915 + -0.4 171,916 - -0.1 171,916 - +1.1 171,916 - -1.0 171,916 - -1.9 171,916 - -0.4 171,916 - -0.4 171,916 - -0.6 171,916 - +0.7 171,916 - +0.2 171,916 - -0.0 171,937 + +0.2 171,937 + -0.5 171,937 + +0.3 171,938 - +0.2 171,938 - -0.2 171,975 + -0.0 171,975 + -2.0 171,975 + -0.0 171,976 - -0.4 171,976 - -0.2 171,976 - -0.3 171,976 - +0.1
Or see this region's nucleotide sequence