Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1272 and GFF1273 overlap by 4 nucleotides GFF1273 and GFF1274 are separated by 20 nucleotides GFF1274 and GFF1275 are separated by 18 nucleotides
GFF1272 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 130,740 to 131,381
GFF1272
GFF1273 - FIG005426: hypothetical protein, at 131,378 to 131,917
GFF1273
GFF1274 - Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA, at 131,938 to 133,119
GFF1274
GFF1275 - GTP-binding protein Obg, at 133,138 to 134,211
GFF1275
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 130.968 kb on + strand, within GFF1272 at 130.969 kb on - strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.013 kb on + strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.014 kb on - strand, within GFF1272 at 131.037 kb on + strand, within GFF1272 at 131.037 kb on + strand, within GFF1272 at 131.038 kb on - strand, within GFF1272 at 131.038 kb on - strand, within GFF1272 at 131.038 kb on - strand, within GFF1272 at 131.124 kb on + strand, within GFF1272 at 131.125 kb on - strand, within GFF1272 at 131.169 kb on + strand, within GFF1272 at 131.169 kb on + strand, within GFF1272 at 131.170 kb on - strand, within GFF1272 at 131.170 kb on - strand, within GFF1272 at 131.170 kb on - strand, within GFF1272 at 131.170 kb on - strand, within GFF1272 at 131.170 kb on - strand, within GFF1272 at 131.199 kb on + strand, within GFF1272 at 131.199 kb on + strand, within GFF1272 at 131.200 kb on - strand, within GFF1272 at 131.200 kb on - strand, within GFF1272 at 131.229 kb on + strand, within GFF1272 at 131.229 kb on + strand, within GFF1272 at 131.229 kb on + strand, within GFF1272 at 131.229 kb on + strand, within GFF1272 at 131.588 kb on + strand, within GFF1273 at 131.588 kb on + strand, within GFF1273 at 131.588 kb on + strand, within GFF1273 at 131.588 kb on + strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.589 kb on - strand, within GFF1273 at 131.639 kb on + strand, within GFF1273 at 131.639 kb on + strand, within GFF1273 at 131.639 kb on + strand, within GFF1273 at 131.639 kb on + strand, within GFF1273 at 131.640 kb on - strand, within GFF1273 at 131.640 kb on - strand, within GFF1273 at 131.640 kb on - strand, within GFF1273 at 131.684 kb on + strand, within GFF1273 at 131.684 kb on + strand, within GFF1273 at 131.684 kb on + strand, within GFF1273 at 131.684 kb on + strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.685 kb on - strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.723 kb on + strand, within GFF1273 at 131.724 kb on - strand, within GFF1273 at 131.724 kb on - strand, within GFF1273 at 131.724 kb on - strand, within GFF1273 at 131.724 kb on - strand, within GFF1273 at 131.939 kb on + strand at 131.993 kb on + strand at 131.994 kb on - strand at 132.060 kb on - strand, within GFF1274 at 132.060 kb on - strand, within GFF1274 at 132.060 kb on - strand, within GFF1274 at 132.527 kb on + strand, within GFF1274 at 132.527 kb on + strand, within GFF1274 at 132.527 kb on + strand, within GFF1274 at 132.527 kb on + strand, within GFF1274 at 132.528 kb on - strand, within GFF1274 at 132.711 kb on - strand, within GFF1274 at 132.791 kb on + strand, within GFF1274 at 132.791 kb on + strand, within GFF1274 at 132.791 kb on + strand, within GFF1274 at 132.791 kb on + strand, within GFF1274 at 132.792 kb on - strand, within GFF1274 at 132.792 kb on - strand, within GFF1274 at 132.792 kb on - strand, within GFF1274 at 132.792 kb on - strand, within GFF1274 at 133.147 kb on - strand at 133.147 kb on - strand at 133.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 130,968 + GFF1272 0.36 +1.4 130,969 - GFF1272 0.36 +1.9 131,013 + GFF1272 0.43 +1.1 131,013 + GFF1272 0.43 +1.4 131,013 + GFF1272 0.43 +1.2 131,013 + GFF1272 0.43 +2.9 131,013 + GFF1272 0.43 +1.3 131,013 + GFF1272 0.43 +1.4 131,013 + GFF1272 0.43 +1.3 131,013 + GFF1272 0.43 +1.3 131,013 + GFF1272 0.43 +1.5 131,014 - GFF1272 0.43 +1.3 131,014 - GFF1272 0.43 +1.5 131,014 - GFF1272 0.43 +0.8 131,014 - GFF1272 0.43 +1.2 131,014 - GFF1272 0.43 +1.2 131,014 - GFF1272 0.43 +1.5 131,014 - GFF1272 0.43 +1.9 131,014 - GFF1272 0.43 +1.4 131,014 - GFF1272 0.43 +1.5 131,014 - GFF1272 0.43 +0.3 131,014 - GFF1272 0.43 +1.8 131,037 + GFF1272 0.46 +1.8 131,037 + GFF1272 0.46 +1.4 131,038 - GFF1272 0.46 +2.4 131,038 - GFF1272 0.46 +1.6 131,038 - GFF1272 0.46 +1.6 131,124 + GFF1272 0.60 +1.3 131,125 - GFF1272 0.60 +2.2 131,169 + GFF1272 0.67 +1.5 131,169 + GFF1272 0.67 +1.1 131,170 - GFF1272 0.67 +1.6 131,170 - GFF1272 0.67 +2.5 131,170 - GFF1272 0.67 +1.6 131,170 - GFF1272 0.67 +1.8 131,170 - GFF1272 0.67 +1.6 131,199 + GFF1272 0.71 +2.2 131,199 + GFF1272 0.71 +0.2 131,200 - GFF1272 0.72 +1.4 131,200 - GFF1272 0.72 +1.4 131,229 + GFF1272 0.76 +0.6 131,229 + GFF1272 0.76 +0.4 131,229 + GFF1272 0.76 +1.2 131,229 + GFF1272 0.76 +0.4 131,588 + GFF1273 0.39 +1.4 131,588 + GFF1273 0.39 -0.4 131,588 + GFF1273 0.39 +0.5 131,588 + GFF1273 0.39 +0.9 131,589 - GFF1273 0.39 -1.0 131,589 - GFF1273 0.39 +0.3 131,589 - GFF1273 0.39 +0.3 131,589 - GFF1273 0.39 -0.4 131,589 - GFF1273 0.39 +0.1 131,589 - GFF1273 0.39 -0.2 131,639 + GFF1273 0.48 +0.1 131,639 + GFF1273 0.48 +0.4 131,639 + GFF1273 0.48 +0.1 131,639 + GFF1273 0.48 +0.9 131,640 - GFF1273 0.49 -0.6 131,640 - GFF1273 0.49 -0.8 131,640 - GFF1273 0.49 +0.0 131,684 + GFF1273 0.57 +0.6 131,684 + GFF1273 0.57 -1.3 131,684 + GFF1273 0.57 +0.3 131,684 + GFF1273 0.57 +0.2 131,685 - GFF1273 0.57 -0.4 131,685 - GFF1273 0.57 -0.2 131,685 - GFF1273 0.57 +0.5 131,685 - GFF1273 0.57 +0.3 131,685 - GFF1273 0.57 +0.7 131,685 - GFF1273 0.57 -0.3 131,685 - GFF1273 0.57 +0.6 131,685 - GFF1273 0.57 -1.0 131,723 + GFF1273 0.64 +0.1 131,723 + GFF1273 0.64 +0.0 131,723 + GFF1273 0.64 +0.1 131,723 + GFF1273 0.64 +1.0 131,723 + GFF1273 0.64 -0.8 131,723 + GFF1273 0.64 +0.1 131,723 + GFF1273 0.64 -0.0 131,723 + GFF1273 0.64 +0.3 131,724 - GFF1273 0.64 -0.1 131,724 - GFF1273 0.64 -0.1 131,724 - GFF1273 0.64 -0.9 131,724 - GFF1273 0.64 +0.2 131,939 + +0.5 131,993 + -0.9 131,994 - -4.0 132,060 - GFF1274 0.10 -3.5 132,060 - GFF1274 0.10 -2.4 132,060 - GFF1274 0.10 -1.4 132,527 + GFF1274 0.50 -2.2 132,527 + GFF1274 0.50 -1.3 132,527 + GFF1274 0.50 -2.6 132,527 + GFF1274 0.50 -0.2 132,528 - GFF1274 0.50 -2.2 132,711 - GFF1274 0.65 -1.1 132,791 + GFF1274 0.72 -0.9 132,791 + GFF1274 0.72 -1.7 132,791 + GFF1274 0.72 -1.5 132,791 + GFF1274 0.72 -1.3 132,792 - GFF1274 0.72 -3.5 132,792 - GFF1274 0.72 -2.4 132,792 - GFF1274 0.72 -3.3 132,792 - GFF1274 0.72 -1.4 133,147 - +0.5 133,147 - +0.5 133,147 - +0.6
Or see this region's nucleotide sequence