Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1243 and GFF1244 are separated by 41 nucleotides GFF1244 and GFF1245 overlap by 4 nucleotides GFF1245 and GFF1246 are separated by 13 nucleotides GFF1246 and GFF1247 overlap by 4 nucleotides GFF1247 and GFF1248 are separated by 17 nucleotides
GFF1243 - Cardiolipin synthetase (EC 2.7.8.-), at 102,819 to 104,084
GFF1243
GFF1244 - Endonuclease/exonuclease/phosphatase, at 104,126 to 104,854
GFF1244
GFF1245 - Dihydroneopterin triphosphate pyrophosphohydolase type 2, at 104,851 to 105,306
GFF1245
GFF1246 - hypothetical protein, at 105,320 to 105,607
GFF1246
GFF1247 - Probable transmembrane protein, at 105,604 to 105,990
GFF1247
GFF1248 - Probable transmembrane protein, at 106,008 to 106,328
GFF1248
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.978 kb on + strand at 103.978 kb on + strand at 103.978 kb on + strand at 103.978 kb on + strand at 103.978 kb on + strand at 103.979 kb on - strand at 103.979 kb on - strand at 103.979 kb on - strand at 104.265 kb on + strand, within GFF1244 at 104.265 kb on + strand, within GFF1244 at 104.265 kb on + strand, within GFF1244 at 104.265 kb on + strand, within GFF1244 at 104.265 kb on + strand, within GFF1244 at 104.397 kb on + strand, within GFF1244 at 104.397 kb on + strand, within GFF1244 at 104.398 kb on - strand, within GFF1244 at 104.398 kb on - strand, within GFF1244 at 104.398 kb on - strand, within GFF1244 at 104.398 kb on - strand, within GFF1244 at 104.472 kb on + strand, within GFF1244 at 104.623 kb on - strand, within GFF1244 at 104.634 kb on + strand, within GFF1244 at 104.635 kb on - strand, within GFF1244 at 104.652 kb on + strand, within GFF1244 at 104.652 kb on + strand, within GFF1244 at 104.653 kb on - strand, within GFF1244 at 104.829 kb on + strand at 104.829 kb on + strand at 104.830 kb on - strand at 104.830 kb on - strand at 104.830 kb on - strand at 104.830 kb on - strand at 104.830 kb on - strand at 104.830 kb on - strand at 104.830 kb on - strand at 105.051 kb on - strand, within GFF1245 at 105.051 kb on - strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.071 kb on + strand, within GFF1245 at 105.072 kb on - strand, within GFF1245 at 105.072 kb on - strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.080 kb on + strand, within GFF1245 at 105.081 kb on - strand, within GFF1245 at 105.233 kb on + strand, within GFF1245 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.677 kb on + strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.678 kb on - strand, within GFF1247 at 105.718 kb on + strand, within GFF1247 at 105.718 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 105.854 kb on + strand, within GFF1247 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.090 kb on + strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248 at 106.091 kb on - strand, within GFF1248
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 103,978 + -0.8 103,978 + -1.6 103,978 + -0.6 103,978 + -0.7 103,978 + -0.7 103,979 - -0.5 103,979 - -0.5 103,979 - +0.6 104,265 + GFF1244 0.19 +0.2 104,265 + GFF1244 0.19 -0.8 104,265 + GFF1244 0.19 -0.2 104,265 + GFF1244 0.19 +0.0 104,265 + GFF1244 0.19 -0.4 104,397 + GFF1244 0.37 +0.5 104,397 + GFF1244 0.37 -0.0 104,398 - GFF1244 0.37 -0.6 104,398 - GFF1244 0.37 -0.1 104,398 - GFF1244 0.37 -0.3 104,398 - GFF1244 0.37 -1.2 104,472 + GFF1244 0.47 +0.0 104,623 - GFF1244 0.68 +0.3 104,634 + GFF1244 0.70 -0.3 104,635 - GFF1244 0.70 -1.2 104,652 + GFF1244 0.72 -0.6 104,652 + GFF1244 0.72 -0.5 104,653 - GFF1244 0.72 +0.4 104,829 + +0.0 104,829 + +0.2 104,830 - -0.7 104,830 - -1.4 104,830 - -0.8 104,830 - +0.1 104,830 - +0.8 104,830 - +0.0 104,830 - -1.2 105,051 - GFF1245 0.44 +0.5 105,051 - GFF1245 0.44 +0.3 105,071 + GFF1245 0.48 +0.4 105,071 + GFF1245 0.48 +0.4 105,071 + GFF1245 0.48 +0.3 105,071 + GFF1245 0.48 +0.2 105,072 - GFF1245 0.48 +0.2 105,072 - GFF1245 0.48 +0.4 105,080 + GFF1245 0.50 +0.6 105,080 + GFF1245 0.50 +0.6 105,080 + GFF1245 0.50 +0.4 105,081 - GFF1245 0.50 +1.4 105,233 + GFF1245 0.84 +0.3 105,677 + GFF1247 0.19 -0.7 105,677 + GFF1247 0.19 -0.1 105,677 + GFF1247 0.19 -1.6 105,677 + GFF1247 0.19 +0.8 105,677 + GFF1247 0.19 +0.3 105,677 + GFF1247 0.19 -1.4 105,678 - GFF1247 0.19 +1.1 105,678 - GFF1247 0.19 -0.2 105,678 - GFF1247 0.19 +0.6 105,678 - GFF1247 0.19 -0.3 105,678 - GFF1247 0.19 -0.4 105,678 - GFF1247 0.19 -0.3 105,678 - GFF1247 0.19 +0.1 105,718 + GFF1247 0.29 -0.0 105,718 + GFF1247 0.29 -0.2 105,854 + GFF1247 0.65 -0.8 105,854 + GFF1247 0.65 +0.8 105,854 + GFF1247 0.65 +0.6 105,854 + GFF1247 0.65 -0.0 105,854 + GFF1247 0.65 +0.1 106,090 + GFF1248 0.26 +0.8 106,090 + GFF1248 0.26 -0.4 106,090 + GFF1248 0.26 -0.6 106,090 + GFF1248 0.26 +0.2 106,090 + GFF1248 0.26 -0.0 106,091 - GFF1248 0.26 +0.8 106,091 - GFF1248 0.26 -0.1 106,091 - GFF1248 0.26 -0.1 106,091 - GFF1248 0.26 +0.7
Or see this region's nucleotide sequence