Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1233 and GFF1234 are separated by 70 nucleotides GFF1234 and GFF1235 are separated by 80 nucleotides GFF1235 and GFF1236 are separated by 50 nucleotides GFF1236 and GFF1237 are separated by 336 nucleotides
GFF1233 - Outer membrane protein romA, at 93,547 to 94,635
GFF1233
GFF1234 - Glyoxalase family protein, at 94,706 to 95,164
GFF1234
GFF1235 - Transcriptional regulator, AraC family, at 95,245 to 96,072
GFF1235
GFF1236 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 96,123 to 96,635
GFF1236
GFF1237 - FIG00932538: hypothetical protein, at 96,972 to 97,817
GFF1237
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1 at 94.295 kb on + strand, within GFF1233 at 94.296 kb on - strand, within GFF1233 at 94.845 kb on + strand, within GFF1234 at 94.845 kb on + strand, within GFF1234 at 94.845 kb on + strand, within GFF1234 at 94.980 kb on + strand, within GFF1234 at 95.100 kb on + strand, within GFF1234 at 95.101 kb on - strand, within GFF1234 at 95.139 kb on + strand at 95.140 kb on - strand at 95.140 kb on - strand at 95.140 kb on - strand at 95.229 kb on + strand at 95.229 kb on + strand at 95.230 kb on - strand at 95.230 kb on - strand at 95.297 kb on + strand at 95.361 kb on - strand, within GFF1235 at 95.450 kb on + strand, within GFF1235 at 95.450 kb on + strand, within GFF1235 at 95.450 kb on + strand, within GFF1235 at 95.450 kb on + strand, within GFF1235 at 95.450 kb on + strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.451 kb on - strand, within GFF1235 at 95.831 kb on + strand, within GFF1235 at 95.832 kb on - strand, within GFF1235 at 95.832 kb on - strand, within GFF1235 at 95.832 kb on - strand, within GFF1235 at 96.088 kb on + strand at 96.089 kb on - strand at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.238 kb on + strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.239 kb on - strand, within GFF1236 at 96.367 kb on + strand, within GFF1236 at 96.368 kb on - strand, within GFF1236 at 96.368 kb on - strand, within GFF1236 at 96.927 kb on + strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.928 kb on - strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.961 kb on + strand at 96.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 94,295 + GFF1233 0.69 -0.4 94,296 - GFF1233 0.69 -0.1 94,845 + GFF1234 0.30 -1.6 94,845 + GFF1234 0.30 +0.0 94,845 + GFF1234 0.30 -0.6 94,980 + GFF1234 0.60 +0.2 95,100 + GFF1234 0.86 -0.6 95,101 - GFF1234 0.86 -0.9 95,139 + -0.2 95,140 - +0.7 95,140 - +1.4 95,140 - +0.5 95,229 + -0.3 95,229 + +0.3 95,230 - -0.0 95,230 - +0.3 95,297 + -2.2 95,361 - GFF1235 0.14 -0.2 95,450 + GFF1235 0.25 +0.3 95,450 + GFF1235 0.25 +0.3 95,450 + GFF1235 0.25 -0.3 95,450 + GFF1235 0.25 +0.1 95,450 + GFF1235 0.25 -0.1 95,451 - GFF1235 0.25 -0.6 95,451 - GFF1235 0.25 +0.6 95,451 - GFF1235 0.25 -0.1 95,451 - GFF1235 0.25 -0.6 95,451 - GFF1235 0.25 -0.0 95,451 - GFF1235 0.25 -0.4 95,451 - GFF1235 0.25 +0.4 95,451 - GFF1235 0.25 +1.3 95,831 + GFF1235 0.71 -0.9 95,832 - GFF1235 0.71 -0.3 95,832 - GFF1235 0.71 +0.3 95,832 - GFF1235 0.71 +1.0 96,088 + +0.0 96,089 - +0.3 96,238 + GFF1236 0.22 +0.3 96,238 + GFF1236 0.22 -0.6 96,238 + GFF1236 0.22 +0.6 96,238 + GFF1236 0.22 +0.1 96,238 + GFF1236 0.22 -0.6 96,238 + GFF1236 0.22 +0.8 96,238 + GFF1236 0.22 -0.0 96,239 - GFF1236 0.23 -0.1 96,239 - GFF1236 0.23 +1.6 96,239 - GFF1236 0.23 -0.1 96,367 + GFF1236 0.48 +1.0 96,368 - GFF1236 0.48 +0.6 96,368 - GFF1236 0.48 -1.1 96,927 + -0.1 96,928 - +0.4 96,928 - -0.5 96,928 - +0.2 96,928 - -0.4 96,961 + +0.9 96,961 + +0.2 96,961 + +0.1 96,961 + -0.8 96,962 - +0.7
Or see this region's nucleotide sequence