Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1108 and GFF1109 are separated by 561 nucleotides GFF1109 and GFF1110 are separated by 488 nucleotides
GFF1108 - Outer membrane porin protein 32 precursor, at 34,787 to 35,821
GFF1108
GFF1109 - Phosphoglycerol transferase I (EC 2.7.8.20), at 36,383 to 38,422
GFF1109
GFF1110 - hypothetical protein, at 38,911 to 40,527
GFF1110
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 35.776 kb on + strand at 35.776 kb on + strand at 35.777 kb on - strand at 35.839 kb on + strand at 35.840 kb on - strand at 35.848 kb on + strand at 35.905 kb on - strand at 35.908 kb on + strand at 35.908 kb on + strand at 35.909 kb on - strand at 35.998 kb on - strand at 35.998 kb on - strand at 35.998 kb on - strand at 35.998 kb on - strand at 35.998 kb on - strand at 36.072 kb on + strand at 36.106 kb on - strand at 36.140 kb on + strand at 36.140 kb on + strand at 36.140 kb on + strand at 36.141 kb on - strand at 36.160 kb on + strand at 36.160 kb on + strand at 36.161 kb on - strand at 36.191 kb on - strand at 36.265 kb on + strand at 36.266 kb on - strand at 36.268 kb on + strand at 36.268 kb on + strand at 36.268 kb on + strand at 36.268 kb on + strand at 36.272 kb on + strand at 36.272 kb on + strand at 36.272 kb on + strand at 36.273 kb on - strand at 36.273 kb on - strand at 36.273 kb on - strand at 36.275 kb on - strand at 36.357 kb on + strand at 36.405 kb on + strand at 36.406 kb on - strand at 36.406 kb on - strand at 36.555 kb on + strand at 36.555 kb on + strand at 36.555 kb on + strand at 36.555 kb on + strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.623 kb on - strand, within GFF1109 at 36.668 kb on + strand, within GFF1109 at 36.676 kb on + strand, within GFF1109 at 36.677 kb on - strand, within GFF1109 at 36.690 kb on - strand, within GFF1109 at 36.690 kb on - strand, within GFF1109 at 36.777 kb on - strand, within GFF1109 at 36.792 kb on + strand, within GFF1109 at 36.792 kb on + strand, within GFF1109 at 36.792 kb on + strand, within GFF1109 at 36.792 kb on + strand, within GFF1109 at 36.793 kb on - strand, within GFF1109 at 36.793 kb on - strand, within GFF1109 at 36.800 kb on - strand, within GFF1109 at 36.800 kb on - strand, within GFF1109 at 36.895 kb on - strand, within GFF1109 at 36.933 kb on + strand, within GFF1109 at 36.933 kb on + strand, within GFF1109 at 36.933 kb on + strand, within GFF1109 at 36.933 kb on + strand, within GFF1109 at 36.933 kb on + strand, within GFF1109 at 36.934 kb on - strand, within GFF1109 at 36.934 kb on - strand, within GFF1109 at 36.934 kb on - strand, within GFF1109 at 36.934 kb on - strand, within GFF1109 at 37.015 kb on + strand, within GFF1109 at 37.016 kb on - strand, within GFF1109 at 37.027 kb on + strand, within GFF1109 at 37.078 kb on + strand, within GFF1109 at 37.078 kb on + strand, within GFF1109 at 37.079 kb on - strand, within GFF1109 at 37.079 kb on - strand, within GFF1109 at 37.082 kb on + strand, within GFF1109 at 37.118 kb on + strand, within GFF1109 at 37.118 kb on + strand, within GFF1109 at 37.119 kb on - strand, within GFF1109 at 37.119 kb on - strand, within GFF1109 at 37.147 kb on - strand, within GFF1109 at 37.157 kb on - strand, within GFF1109 at 37.200 kb on + strand, within GFF1109 at 37.200 kb on + strand, within GFF1109 at 37.341 kb on + strand, within GFF1109 at 37.341 kb on + strand, within GFF1109 at 37.493 kb on + strand, within GFF1109 at 37.568 kb on + strand, within GFF1109 at 37.596 kb on + strand, within GFF1109 at 37.596 kb on + strand, within GFF1109 at 37.596 kb on + strand, within GFF1109 at 37.596 kb on + strand, within GFF1109 at 37.632 kb on + strand, within GFF1109 at 37.633 kb on - strand, within GFF1109 at 37.633 kb on - strand, within GFF1109 at 37.641 kb on + strand, within GFF1109 at 37.641 kb on + strand, within GFF1109 at 37.642 kb on - strand, within GFF1109 at 37.653 kb on + strand, within GFF1109 at 37.799 kb on + strand, within GFF1109 at 37.823 kb on + strand, within GFF1109 at 37.823 kb on + strand, within GFF1109 at 37.823 kb on + strand, within GFF1109 at 37.824 kb on - strand, within GFF1109 at 37.824 kb on - strand, within GFF1109 at 37.846 kb on - strand, within GFF1109 at 37.846 kb on - strand, within GFF1109 at 37.899 kb on + strand, within GFF1109 at 37.959 kb on + strand, within GFF1109 at 37.959 kb on + strand, within GFF1109 at 37.959 kb on + strand, within GFF1109 at 37.960 kb on - strand, within GFF1109 at 37.960 kb on - strand, within GFF1109 at 37.960 kb on - strand, within GFF1109 at 37.960 kb on - strand, within GFF1109 at 37.977 kb on + strand, within GFF1109 at 37.978 kb on - strand, within GFF1109 at 38.086 kb on - strand, within GFF1109 at 38.144 kb on + strand, within GFF1109 at 38.144 kb on + strand, within GFF1109 at 38.145 kb on - strand, within GFF1109 at 38.155 kb on + strand, within GFF1109 at 38.156 kb on - strand, within GFF1109 at 38.156 kb on - strand, within GFF1109 at 38.156 kb on - strand, within GFF1109 at 38.156 kb on - strand, within GFF1109 at 38.276 kb on + strand at 38.276 kb on + strand at 38.277 kb on - strand at 38.285 kb on + strand at 38.439 kb on - strand at 38.439 kb on - strand at 38.493 kb on + strand at 38.493 kb on + strand at 38.508 kb on + strand at 38.508 kb on + strand at 38.508 kb on + strand at 38.509 kb on - strand at 38.544 kb on + strand at 38.545 kb on - strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.610 kb on - strand at 38.669 kb on + strand at 38.670 kb on - strand at 38.670 kb on - strand at 38.676 kb on + strand at 38.676 kb on + strand at 38.677 kb on - strand at 38.696 kb on - strand at 38.743 kb on + strand at 38.777 kb on + strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.807 kb on + strand at 38.841 kb on + strand at 38.901 kb on - strand at 38.901 kb on - strand at 38.963 kb on + strand at 38.963 kb on + strand at 38.963 kb on + strand at 38.964 kb on - strand at 38.964 kb on - strand at 38.964 kb on - strand at 38.996 kb on + strand at 38.997 kb on - strand at 39.047 kb on + strand at 39.047 kb on + strand at 39.048 kb on - strand at 39.059 kb on - strand at 39.059 kb on - strand at 39.088 kb on + strand, within GFF1110 at 39.089 kb on - strand, within GFF1110 at 39.109 kb on + strand, within GFF1110 at 39.110 kb on - strand, within GFF1110 at 39.213 kb on + strand, within GFF1110 at 39.213 kb on + strand, within GFF1110 at 39.213 kb on + strand, within GFF1110 at 39.213 kb on + strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.214 kb on - strand, within GFF1110 at 39.258 kb on - strand, within GFF1110 at 39.282 kb on + strand, within GFF1110 at 39.282 kb on + strand, within GFF1110 at 39.282 kb on + strand, within GFF1110 at 39.283 kb on - strand, within GFF1110 at 39.283 kb on - strand, within GFF1110 at 39.283 kb on - strand, within GFF1110 at 39.283 kb on - strand, within GFF1110 at 39.283 kb on - strand, within GFF1110 at 39.284 kb on - strand, within GFF1110
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 35,776 + -0.2 35,776 + +0.4 35,777 - -0.9 35,839 + -0.5 35,840 - -0.1 35,848 + +0.4 35,905 - -1.1 35,908 + +0.6 35,908 + -0.3 35,909 - -0.2 35,998 - +0.8 35,998 - +1.4 35,998 - -0.8 35,998 - +0.5 35,998 - -0.1 36,072 + -0.1 36,106 - -0.2 36,140 + -0.1 36,140 + -0.0 36,140 + -1.6 36,141 - -0.1 36,160 + +0.1 36,160 + -1.5 36,161 - -0.3 36,191 - +0.2 36,265 + -0.3 36,266 - -0.1 36,268 + +0.1 36,268 + +0.5 36,268 + -0.3 36,268 + +0.2 36,272 + -0.3 36,272 + +0.6 36,272 + -0.2 36,273 - +0.0 36,273 - +0.3 36,273 - +0.0 36,275 - +0.1 36,357 + -0.4 36,405 + +0.1 36,406 - +0.1 36,406 - +0.1 36,555 + -0.4 36,555 + -0.7 36,555 + -0.0 36,555 + -0.3 36,556 - +0.6 36,556 - -2.3 36,556 - +0.3 36,556 - -0.4 36,556 - +0.1 36,556 - +0.1 36,623 - GFF1109 0.12 +1.5 36,668 + GFF1109 0.14 -0.3 36,676 + GFF1109 0.14 -0.3 36,677 - GFF1109 0.14 -0.1 36,690 - GFF1109 0.15 +0.7 36,690 - GFF1109 0.15 -0.0 36,777 - GFF1109 0.19 +1.5 36,792 + GFF1109 0.20 -0.5 36,792 + GFF1109 0.20 +0.8 36,792 + GFF1109 0.20 +0.0 36,792 + GFF1109 0.20 +0.1 36,793 - GFF1109 0.20 +0.2 36,793 - GFF1109 0.20 +0.4 36,800 - GFF1109 0.20 +0.1 36,800 - GFF1109 0.20 +0.4 36,895 - GFF1109 0.25 +0.8 36,933 + GFF1109 0.27 -0.0 36,933 + GFF1109 0.27 +0.4 36,933 + GFF1109 0.27 +0.6 36,933 + GFF1109 0.27 -0.4 36,933 + GFF1109 0.27 +0.4 36,934 - GFF1109 0.27 +0.0 36,934 - GFF1109 0.27 -0.2 36,934 - GFF1109 0.27 +0.6 36,934 - GFF1109 0.27 +0.7 37,015 + GFF1109 0.31 -0.4 37,016 - GFF1109 0.31 +0.0 37,027 + GFF1109 0.32 -0.3 37,078 + GFF1109 0.34 +0.8 37,078 + GFF1109 0.34 +0.1 37,079 - GFF1109 0.34 +0.7 37,079 - GFF1109 0.34 +0.5 37,082 + GFF1109 0.34 +0.3 37,118 + GFF1109 0.36 -0.1 37,118 + GFF1109 0.36 -0.3 37,119 - GFF1109 0.36 +0.2 37,119 - GFF1109 0.36 -0.4 37,147 - GFF1109 0.37 -0.4 37,157 - GFF1109 0.38 +0.2 37,200 + GFF1109 0.40 +0.5 37,200 + GFF1109 0.40 +0.6 37,341 + GFF1109 0.47 +0.1 37,341 + GFF1109 0.47 -0.9 37,493 + GFF1109 0.54 -1.7 37,568 + GFF1109 0.58 -0.4 37,596 + GFF1109 0.59 +0.5 37,596 + GFF1109 0.59 -0.4 37,596 + GFF1109 0.59 +1.2 37,596 + GFF1109 0.59 +0.1 37,632 + GFF1109 0.61 +0.1 37,633 - GFF1109 0.61 +0.2 37,633 - GFF1109 0.61 -0.1 37,641 + GFF1109 0.62 -0.9 37,641 + GFF1109 0.62 +0.1 37,642 - GFF1109 0.62 +0.8 37,653 + GFF1109 0.62 -0.4 37,799 + GFF1109 0.69 +0.0 37,823 + GFF1109 0.71 +0.1 37,823 + GFF1109 0.71 -0.5 37,823 + GFF1109 0.71 -1.9 37,824 - GFF1109 0.71 -0.2 37,824 - GFF1109 0.71 -1.0 37,846 - GFF1109 0.72 -1.1 37,846 - GFF1109 0.72 -0.0 37,899 + GFF1109 0.74 +0.6 37,959 + GFF1109 0.77 -0.3 37,959 + GFF1109 0.77 +0.3 37,959 + GFF1109 0.77 -0.3 37,960 - GFF1109 0.77 +1.1 37,960 - GFF1109 0.77 -1.3 37,960 - GFF1109 0.77 +0.6 37,960 - GFF1109 0.77 -0.2 37,977 + GFF1109 0.78 -0.7 37,978 - GFF1109 0.78 -0.2 38,086 - GFF1109 0.83 +0.3 38,144 + GFF1109 0.86 -0.3 38,144 + GFF1109 0.86 -0.2 38,145 - GFF1109 0.86 -0.5 38,155 + GFF1109 0.87 -2.0 38,156 - GFF1109 0.87 -1.1 38,156 - GFF1109 0.87 +0.2 38,156 - GFF1109 0.87 -0.8 38,156 - GFF1109 0.87 +0.2 38,276 + +0.4 38,276 + -0.2 38,277 - -0.1 38,285 + -0.4 38,439 - -0.8 38,439 - -0.8 38,493 + +0.9 38,493 + -0.1 38,508 + -0.0 38,508 + +0.4 38,508 + +0.3 38,509 - +0.2 38,544 + +0.6 38,545 - +0.8 38,609 + +0.1 38,609 + -0.9 38,609 + +0.2 38,610 - +0.2 38,669 + +0.3 38,670 - +0.5 38,670 - -2.2 38,676 + +0.5 38,676 + +0.7 38,677 - +0.4 38,696 - +0.4 38,743 + -0.0 38,777 + -0.3 38,784 + -0.3 38,785 - -0.7 38,785 - -0.3 38,807 + -0.0 38,841 + -0.2 38,901 - -0.5 38,901 - +1.0 38,963 + +0.2 38,963 + +0.4 38,963 + +0.3 38,964 - -1.2 38,964 - -0.0 38,964 - -0.0 38,996 + -0.6 38,997 - +0.3 39,047 + -0.2 39,047 + -0.0 39,048 - +0.1 39,059 - -0.9 39,059 - -0.1 39,088 + GFF1110 0.11 +0.0 39,089 - GFF1110 0.11 -0.1 39,109 + GFF1110 0.12 -0.2 39,110 - GFF1110 0.12 +0.2 39,213 + GFF1110 0.19 -0.7 39,213 + GFF1110 0.19 +1.1 39,213 + GFF1110 0.19 -0.6 39,213 + GFF1110 0.19 +0.5 39,214 - GFF1110 0.19 +0.9 39,214 - GFF1110 0.19 +0.3 39,214 - GFF1110 0.19 +0.6 39,214 - GFF1110 0.19 -0.0 39,214 - GFF1110 0.19 -0.8 39,214 - GFF1110 0.19 -0.4 39,214 - GFF1110 0.19 -0.1 39,258 - GFF1110 0.21 +0.5 39,282 + GFF1110 0.23 -0.3 39,282 + GFF1110 0.23 +0.1 39,282 + GFF1110 0.23 -1.1 39,283 - GFF1110 0.23 -0.4 39,283 - GFF1110 0.23 +0.1 39,283 - GFF1110 0.23 -0.1 39,283 - GFF1110 0.23 -0.0 39,283 - GFF1110 0.23 -0.5 39,284 - GFF1110 0.23 +0.1
Or see this region's nucleotide sequence