Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1069 and GFF1070 overlap by 4 nucleotides GFF1070 and GFF1071 are separated by 331 nucleotides GFF1071 and GFF1072 are separated by 14 nucleotides
GFF1069 - hypothetical protein, at 819,086 to 819,508
GFF1069
GFF1070 - Mobile element protein, at 819,505 to 820,218
GFF1070
GFF1071 - hypothetical protein, at 820,550 to 821,044
GFF1071
GFF1072 - hypothetical protein, at 821,059 to 821,274
GFF1072
Position (kb) 819
820
821 Strain fitness (log2 ratio) -2
-1
0
1 at 818.505 kb on + strand at 818.505 kb on + strand at 818.505 kb on + strand at 818.505 kb on + strand at 818.506 kb on - strand at 818.506 kb on - strand at 818.506 kb on - strand at 818.619 kb on + strand at 818.620 kb on - strand at 818.620 kb on - strand at 818.632 kb on + strand at 818.632 kb on + strand at 818.634 kb on - strand at 818.635 kb on + strand at 818.635 kb on + strand at 818.635 kb on + strand at 818.661 kb on - strand at 818.964 kb on - strand at 818.964 kb on - strand at 818.971 kb on + strand at 818.971 kb on + strand at 818.972 kb on - strand at 818.980 kb on + strand at 818.980 kb on + strand at 818.980 kb on + strand at 819.009 kb on - strand at 819.009 kb on - strand at 819.062 kb on - strand at 819.319 kb on + strand, within GFF1069 at 819.319 kb on + strand, within GFF1069 at 819.320 kb on - strand, within GFF1069 at 819.339 kb on + strand, within GFF1069 at 819.339 kb on + strand, within GFF1069 at 819.340 kb on - strand, within GFF1069 at 819.625 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 819.666 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.044 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.045 kb on + strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.046 kb on - strand, within GFF1070 at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.350 kb on + strand at 820.365 kb on + strand at 820.566 kb on - strand at 820.628 kb on - strand, within GFF1071 at 820.696 kb on - strand, within GFF1071 at 820.987 kb on - strand, within GFF1071
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 818,505 + -0.3 818,505 + +0.2 818,505 + -0.3 818,505 + -0.2 818,506 - +0.3 818,506 - +0.2 818,506 - +0.4 818,619 + -0.4 818,620 - +0.9 818,620 - +0.5 818,632 + -0.3 818,632 + +1.2 818,634 - +0.2 818,635 + -0.4 818,635 + -0.2 818,635 + -0.1 818,661 - +0.3 818,964 - +0.3 818,964 - -0.3 818,971 + -0.2 818,971 + +0.4 818,972 - -0.2 818,980 + +0.2 818,980 + -0.1 818,980 + -0.3 819,009 - +0.7 819,009 - -0.2 819,062 - -0.6 819,319 + GFF1069 0.55 -0.1 819,319 + GFF1069 0.55 -0.3 819,320 - GFF1069 0.55 -0.2 819,339 + GFF1069 0.60 +0.6 819,339 + GFF1069 0.60 -0.7 819,340 - GFF1069 0.60 +0.1 819,625 + GFF1070 0.17 +1.2 819,666 + GFF1070 0.23 -0.1 819,666 + GFF1070 0.23 +0.2 819,666 + GFF1070 0.23 +0.7 819,666 + GFF1070 0.23 +0.1 820,044 + GFF1070 0.75 +0.4 820,044 + GFF1070 0.75 -0.1 820,044 + GFF1070 0.75 -0.0 820,045 + GFF1070 0.76 +0.7 820,045 + GFF1070 0.76 +0.6 820,045 + GFF1070 0.76 -0.2 820,045 + GFF1070 0.76 +0.1 820,045 + GFF1070 0.76 +0.7 820,045 + GFF1070 0.76 -0.0 820,045 + GFF1070 0.76 +0.1 820,046 - GFF1070 0.76 +0.1 820,046 - GFF1070 0.76 -0.4 820,046 - GFF1070 0.76 +0.7 820,046 - GFF1070 0.76 +0.8 820,046 - GFF1070 0.76 -0.1 820,046 - GFF1070 0.76 -0.6 820,046 - GFF1070 0.76 +0.6 820,046 - GFF1070 0.76 +0.7 820,046 - GFF1070 0.76 -0.7 820,046 - GFF1070 0.76 -0.1 820,046 - GFF1070 0.76 +0.2 820,046 - GFF1070 0.76 -0.2 820,350 + -0.1 820,350 + -0.6 820,350 + -0.2 820,350 + +0.1 820,350 + +1.4 820,350 + -2.4 820,365 + -2.6 820,566 - +0.4 820,628 - GFF1071 0.16 -2.3 820,696 - GFF1071 0.29 -1.0 820,987 - GFF1071 0.88 -2.0
Or see this region's nucleotide sequence