Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS03550 and COO64_RS03555 are separated by 9 nucleotides COO64_RS03555 and COO64_RS03560 overlap by 17 nucleotides COO64_RS03560 and COO64_RS03565 overlap by 8 nucleotides COO64_RS03565 and folM are separated by 24 nucleotides
COO64_RS03550: COO64_RS03550 - GNAT family N-acetyltransferase, at 191,021 to 191,707
_RS03550
COO64_RS03555: COO64_RS03555 - alpha/beta fold hydrolase, at 191,717 to 192,670
_RS03555
COO64_RS03560: COO64_RS03560 - HopJ type III effector protein, at 192,654 to 192,995
_RS03560
COO64_RS03565: COO64_RS03565 - DUF1244 domain-containing protein, at 192,988 to 193,284
_RS03565
COO64_RS03570: folM - dihydromonapterin reductase, at 193,309 to 194,007
folM
Position (kb) 192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 191.751 kb on + strand at 191.891 kb on + strand, within COO64_RS03555 at 191.891 kb on + strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.892 kb on - strand, within COO64_RS03555 at 191.894 kb on + strand, within COO64_RS03555 at 191.894 kb on + strand, within COO64_RS03555 at 191.895 kb on - strand, within COO64_RS03555 at 191.895 kb on - strand, within COO64_RS03555 at 191.912 kb on + strand, within COO64_RS03555 at 191.913 kb on - strand, within COO64_RS03555 at 191.913 kb on - strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.945 kb on + strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.946 kb on - strand, within COO64_RS03555 at 191.952 kb on - strand, within COO64_RS03555 at 191.952 kb on - strand, within COO64_RS03555 at 191.952 kb on - strand, within COO64_RS03555 at 191.952 kb on - strand, within COO64_RS03555 at 192.177 kb on - strand, within COO64_RS03555 at 192.177 kb on - strand, within COO64_RS03555 at 192.188 kb on + strand, within COO64_RS03555 at 192.189 kb on - strand, within COO64_RS03555 at 192.264 kb on - strand, within COO64_RS03555 at 192.298 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.344 kb on + strand, within COO64_RS03555 at 192.345 kb on - strand, within COO64_RS03555 at 192.345 kb on - strand, within COO64_RS03555 at 192.475 kb on - strand, within COO64_RS03555 at 192.475 kb on - strand, within COO64_RS03555 at 192.483 kb on - strand, within COO64_RS03555 at 192.483 kb on - strand, within COO64_RS03555 at 192.483 kb on - strand, within COO64_RS03555 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.904 kb on + strand, within COO64_RS03560 at 192.905 kb on - strand, within COO64_RS03560 at 192.905 kb on - strand, within COO64_RS03560 at 192.905 kb on - strand, within COO64_RS03560 at 192.905 kb on - strand, within COO64_RS03560 at 192.905 kb on - strand, within COO64_RS03560 at 192.910 kb on + strand, within COO64_RS03560 at 192.910 kb on + strand, within COO64_RS03560 at 192.910 kb on + strand, within COO64_RS03560 at 192.910 kb on + strand, within COO64_RS03560 at 192.910 kb on + strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 192.911 kb on - strand, within COO64_RS03560 at 193.049 kb on + strand, within COO64_RS03565 at 193.049 kb on + strand, within COO64_RS03565 at 193.070 kb on + strand, within COO64_RS03565 at 193.070 kb on + strand, within COO64_RS03565 at 193.070 kb on + strand, within COO64_RS03565 at 193.071 kb on - strand, within COO64_RS03565 at 193.082 kb on + strand, within COO64_RS03565 at 193.082 kb on + strand, within COO64_RS03565 at 193.082 kb on + strand, within COO64_RS03565 at 193.083 kb on - strand, within COO64_RS03565 at 193.145 kb on + strand, within COO64_RS03565 at 193.145 kb on + strand, within COO64_RS03565 at 193.145 kb on + strand, within COO64_RS03565 at 193.145 kb on + strand, within COO64_RS03565 at 193.145 kb on + strand, within COO64_RS03565 at 193.146 kb on - strand, within COO64_RS03565 at 193.146 kb on - strand, within COO64_RS03565 at 193.146 kb on - strand, within COO64_RS03565 at 193.146 kb on - strand, within COO64_RS03565 at 193.264 kb on + strand at 193.264 kb on + strand at 193.264 kb on + strand at 193.264 kb on + strand at 193.264 kb on + strand at 193.264 kb on + strand at 193.265 kb on - strand at 193.265 kb on - strand at 193.265 kb on - strand at 193.305 kb on + strand at 193.306 kb on - strand at 193.306 kb on - strand at 193.306 kb on - strand at 193.306 kb on - strand at 193.376 kb on + strand at 193.376 kb on + strand at 193.376 kb on + strand at 193.376 kb on + strand at 193.376 kb on + strand at 193.377 kb on - strand at 193.541 kb on + strand, within folM at 193.541 kb on + strand, within folM at 193.541 kb on + strand, within folM at 193.542 kb on - strand, within folM at 193.542 kb on - strand, within folM at 193.596 kb on - strand, within folM at 193.596 kb on - strand, within folM at 193.703 kb on + strand, within folM at 193.704 kb on - strand, within folM at 193.704 kb on - strand, within folM at 193.803 kb on - strand, within folM at 193.803 kb on - strand, within folM at 193.927 kb on - strand, within folM
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.5 X remove 191,751 + -0.2 191,891 + COO64_RS03555 0.18 -0.9 191,891 + COO64_RS03555 0.18 -0.4 191,892 - COO64_RS03555 0.18 -0.3 191,892 - COO64_RS03555 0.18 -0.3 191,892 - COO64_RS03555 0.18 -0.1 191,892 - COO64_RS03555 0.18 +0.5 191,892 - COO64_RS03555 0.18 -0.7 191,892 - COO64_RS03555 0.18 -0.1 191,892 - COO64_RS03555 0.18 -0.1 191,892 - COO64_RS03555 0.18 -1.2 191,892 - COO64_RS03555 0.18 +0.1 191,892 - COO64_RS03555 0.18 -0.5 191,894 + COO64_RS03555 0.19 +0.3 191,894 + COO64_RS03555 0.19 -2.0 191,895 - COO64_RS03555 0.19 -0.6 191,895 - COO64_RS03555 0.19 +0.3 191,912 + COO64_RS03555 0.20 -0.6 191,913 - COO64_RS03555 0.21 +0.2 191,913 - COO64_RS03555 0.21 +0.3 191,945 + COO64_RS03555 0.24 -0.5 191,945 + COO64_RS03555 0.24 -0.4 191,945 + COO64_RS03555 0.24 -1.3 191,945 + COO64_RS03555 0.24 +0.5 191,945 + COO64_RS03555 0.24 -2.6 191,945 + COO64_RS03555 0.24 -0.7 191,945 + COO64_RS03555 0.24 +0.1 191,945 + COO64_RS03555 0.24 -0.8 191,945 + COO64_RS03555 0.24 +0.6 191,946 - COO64_RS03555 0.24 -0.8 191,946 - COO64_RS03555 0.24 -0.5 191,946 - COO64_RS03555 0.24 +0.2 191,946 - COO64_RS03555 0.24 -0.1 191,946 - COO64_RS03555 0.24 -0.0 191,946 - COO64_RS03555 0.24 -0.4 191,946 - COO64_RS03555 0.24 -0.7 191,946 - COO64_RS03555 0.24 -0.8 191,946 - COO64_RS03555 0.24 -0.1 191,952 - COO64_RS03555 0.25 -0.4 191,952 - COO64_RS03555 0.25 +1.9 191,952 - COO64_RS03555 0.25 +0.1 191,952 - COO64_RS03555 0.25 +0.4 192,177 - COO64_RS03555 0.48 -0.2 192,177 - COO64_RS03555 0.48 -0.6 192,188 + COO64_RS03555 0.49 +1.5 192,189 - COO64_RS03555 0.49 +0.5 192,264 - COO64_RS03555 0.57 -1.1 192,298 + COO64_RS03555 0.61 -0.1 192,344 + COO64_RS03555 0.66 -0.1 192,344 + COO64_RS03555 0.66 -0.4 192,344 + COO64_RS03555 0.66 -0.4 192,344 + COO64_RS03555 0.66 -1.8 192,344 + COO64_RS03555 0.66 +0.1 192,344 + COO64_RS03555 0.66 -0.7 192,344 + COO64_RS03555 0.66 +0.3 192,345 - COO64_RS03555 0.66 +0.8 192,345 - COO64_RS03555 0.66 -0.6 192,475 - COO64_RS03555 0.79 -0.6 192,475 - COO64_RS03555 0.79 +0.3 192,483 - COO64_RS03555 0.80 -0.4 192,483 - COO64_RS03555 0.80 -0.3 192,483 - COO64_RS03555 0.80 -1.6 192,904 + COO64_RS03560 0.73 +0.3 192,904 + COO64_RS03560 0.73 +0.1 192,904 + COO64_RS03560 0.73 -0.8 192,904 + COO64_RS03560 0.73 -0.9 192,904 + COO64_RS03560 0.73 +0.7 192,904 + COO64_RS03560 0.73 -0.6 192,904 + COO64_RS03560 0.73 -0.5 192,904 + COO64_RS03560 0.73 +0.4 192,904 + COO64_RS03560 0.73 +0.7 192,904 + COO64_RS03560 0.73 +0.7 192,905 - COO64_RS03560 0.73 +0.8 192,905 - COO64_RS03560 0.73 +0.2 192,905 - COO64_RS03560 0.73 +0.6 192,905 - COO64_RS03560 0.73 +0.3 192,905 - COO64_RS03560 0.73 -0.2 192,910 + COO64_RS03560 0.75 +1.0 192,910 + COO64_RS03560 0.75 +0.9 192,910 + COO64_RS03560 0.75 +0.2 192,910 + COO64_RS03560 0.75 -0.2 192,910 + COO64_RS03560 0.75 -0.0 192,911 - COO64_RS03560 0.75 +0.7 192,911 - COO64_RS03560 0.75 -0.3 192,911 - COO64_RS03560 0.75 +0.1 192,911 - COO64_RS03560 0.75 +0.6 192,911 - COO64_RS03560 0.75 +0.8 192,911 - COO64_RS03560 0.75 +1.4 192,911 - COO64_RS03560 0.75 +0.5 193,049 + COO64_RS03565 0.21 -0.1 193,049 + COO64_RS03565 0.21 +0.0 193,070 + COO64_RS03565 0.28 -0.9 193,070 + COO64_RS03565 0.28 +0.1 193,070 + COO64_RS03565 0.28 +0.2 193,071 - COO64_RS03565 0.28 -0.1 193,082 + COO64_RS03565 0.32 -0.3 193,082 + COO64_RS03565 0.32 +0.0 193,082 + COO64_RS03565 0.32 -1.0 193,083 - COO64_RS03565 0.32 -1.3 193,145 + COO64_RS03565 0.53 +0.2 193,145 + COO64_RS03565 0.53 -0.2 193,145 + COO64_RS03565 0.53 +0.5 193,145 + COO64_RS03565 0.53 +0.6 193,145 + COO64_RS03565 0.53 +0.6 193,146 - COO64_RS03565 0.53 -0.9 193,146 - COO64_RS03565 0.53 +0.0 193,146 - COO64_RS03565 0.53 +0.2 193,146 - COO64_RS03565 0.53 -0.5 193,264 + -0.7 193,264 + -0.7 193,264 + +0.1 193,264 + +0.2 193,264 + -0.1 193,264 + -0.4 193,265 - -1.6 193,265 - +0.2 193,265 - -0.3 193,305 + +0.2 193,306 - -0.5 193,306 - -1.3 193,306 - -1.2 193,306 - -0.1 193,376 + -1.2 193,376 + +0.1 193,376 + +0.3 193,376 + +0.2 193,376 + -0.6 193,377 - -1.1 193,541 + folM COO64_RS03570 0.33 -1.7 193,541 + folM COO64_RS03570 0.33 -0.1 193,541 + folM COO64_RS03570 0.33 +0.9 193,542 - folM COO64_RS03570 0.33 -1.3 193,542 - folM COO64_RS03570 0.33 -2.0 193,596 - folM COO64_RS03570 0.41 +0.2 193,596 - folM COO64_RS03570 0.41 +0.9 193,703 + folM COO64_RS03570 0.56 -1.0 193,704 - folM COO64_RS03570 0.57 +0.0 193,704 - folM COO64_RS03570 0.57 -0.1 193,803 - folM COO64_RS03570 0.71 -1.1 193,803 - folM COO64_RS03570 0.71 +1.9 193,927 - folM COO64_RS03570 0.88 -0.7
Or see this region's nucleotide sequence