Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03838

Experiment: B-glucan from yeast 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03836 and BACOVA_03837 are separated by 253 nucleotidesBACOVA_03837 and BACOVA_03838 are separated by 0 nucleotidesBACOVA_03838 and BACOVA_03839 are separated by 26 nucleotides BACOVA_03836: BACOVA_03836 - transcriptional regulator, MarR family, at 186,373 to 186,813 _03836 BACOVA_03837: BACOVA_03837 - hypothetical protein, at 187,067 to 187,666 _03837 BACOVA_03838: BACOVA_03838 - hypothetical protein, at 187,667 to 187,963 _03838 BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342 _03839 Position (kb) 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.683 kb on - strand, within BACOVA_03836at 186.683 kb on - strand, within BACOVA_03836at 186.741 kb on + strand, within BACOVA_03836at 186.741 kb on + strand, within BACOVA_03836at 186.760 kb on - strand, within BACOVA_03836at 186.818 kb on + strandat 186.818 kb on + strandat 186.819 kb on - strandat 186.913 kb on - strandat 186.915 kb on - strandat 186.927 kb on + strandat 186.928 kb on - strandat 187.000 kb on + strandat 187.072 kb on + strandat 187.144 kb on - strand, within BACOVA_03837at 187.176 kb on - strand, within BACOVA_03837at 187.193 kb on + strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.194 kb on - strand, within BACOVA_03837at 187.202 kb on - strand, within BACOVA_03837at 187.231 kb on - strand, within BACOVA_03837at 187.231 kb on - strand, within BACOVA_03837at 187.316 kb on - strand, within BACOVA_03837at 187.433 kb on + strand, within BACOVA_03837at 187.433 kb on + strand, within BACOVA_03837at 187.464 kb on + strand, within BACOVA_03837at 187.469 kb on + strand, within BACOVA_03837at 187.477 kb on - strand, within BACOVA_03837at 187.518 kb on + strand, within BACOVA_03837at 187.518 kb on + strand, within BACOVA_03837at 187.519 kb on - strand, within BACOVA_03837at 187.519 kb on - strand, within BACOVA_03837at 187.525 kb on - strand, within BACOVA_03837at 187.525 kb on - strand, within BACOVA_03837at 187.529 kb on + strand, within BACOVA_03837at 187.530 kb on - strand, within BACOVA_03837at 187.672 kb on - strandat 187.672 kb on - strandat 187.672 kb on - strandat 187.690 kb on + strandat 187.691 kb on - strandat 187.693 kb on + strandat 187.693 kb on + strandat 187.840 kb on + strand, within BACOVA_03838at 187.840 kb on + strand, within BACOVA_03838at 187.850 kb on - strand, within BACOVA_03838at 187.927 kb on + strand, within BACOVA_03838at 187.928 kb on - strand, within BACOVA_03838at 187.990 kb on - strandat 188.037 kb on + strandat 188.037 kb on + strandat 188.038 kb on - strandat 188.091 kb on - strandat 188.170 kb on - strand, within BACOVA_03839at 188.180 kb on + strand, within BACOVA_03839at 188.222 kb on - strand, within BACOVA_03839at 188.277 kb on + strand, within BACOVA_03839at 188.278 kb on - strand, within BACOVA_03839at 188.327 kb on + strand, within BACOVA_03839at 188.328 kb on - strand, within BACOVA_03839at 188.352 kb on + strand, within BACOVA_03839at 188.369 kb on + strand, within BACOVA_03839at 188.369 kb on + strand, within BACOVA_03839at 188.570 kb on + strand, within BACOVA_03839at 188.571 kb on - strand, within BACOVA_03839at 188.571 kb on - strand, within BACOVA_03839at 188.574 kb on + strand, within BACOVA_03839at 188.622 kb on + strand, within BACOVA_03839at 188.635 kb on + strand, within BACOVA_03839at 188.635 kb on + strand, within BACOVA_03839at 188.680 kb on - strand, within BACOVA_03839at 188.692 kb on - strand, within BACOVA_03839at 188.706 kb on - strand, within BACOVA_03839at 188.749 kb on + strand, within BACOVA_03839at 188.750 kb on - strand, within BACOVA_03839at 188.757 kb on + strand, within BACOVA_03839at 188.807 kb on + strand, within BACOVA_03839at 188.824 kb on + strand, within BACOVA_03839at 188.846 kb on - strand, within BACOVA_03839at 188.918 kb on - strand, within BACOVA_03839at 188.963 kb on + strand, within BACOVA_03839

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Per-strain Table

Position Strand Gene LocusTag Fraction B-glucan from yeast 2.5 mg/mL (C)
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186,683 - BACOVA_03836 0.70 +0.5
186,683 - BACOVA_03836 0.70 +0.7
186,741 + BACOVA_03836 0.83 +1.6
186,741 + BACOVA_03836 0.83 -0.6
186,760 - BACOVA_03836 0.88 -0.6
186,818 + +1.0
186,818 + +0.6
186,819 - -0.6
186,913 - -0.8
186,915 - +0.0
186,927 + +0.4
186,928 - -1.8
187,000 + -0.3
187,072 + -0.4
187,144 - BACOVA_03837 0.13 -0.9
187,176 - BACOVA_03837 0.18 +0.3
187,193 + BACOVA_03837 0.21 -0.4
187,194 - BACOVA_03837 0.21 -0.6
187,194 - BACOVA_03837 0.21 +1.2
187,194 - BACOVA_03837 0.21 +1.0
187,202 - BACOVA_03837 0.23 +0.3
187,231 - BACOVA_03837 0.27 +0.8
187,231 - BACOVA_03837 0.27 +0.4
187,316 - BACOVA_03837 0.41 -1.5
187,433 + BACOVA_03837 0.61 -0.1
187,433 + BACOVA_03837 0.61 +2.0
187,464 + BACOVA_03837 0.66 -0.2
187,469 + BACOVA_03837 0.67 -0.4
187,477 - BACOVA_03837 0.68 +1.0
187,518 + BACOVA_03837 0.75 -1.7
187,518 + BACOVA_03837 0.75 -1.0
187,519 - BACOVA_03837 0.75 -0.3
187,519 - BACOVA_03837 0.75 -1.0
187,525 - BACOVA_03837 0.76 -0.9
187,525 - BACOVA_03837 0.76 -0.0
187,529 + BACOVA_03837 0.77 -0.3
187,530 - BACOVA_03837 0.77 +0.5
187,672 - +1.9
187,672 - +0.1
187,672 - +1.2
187,690 + +0.1
187,691 - +1.9
187,693 + +0.9
187,693 + +0.5
187,840 + BACOVA_03838 0.58 -2.8
187,840 + BACOVA_03838 0.58 -0.1
187,850 - BACOVA_03838 0.62 +0.9
187,927 + BACOVA_03838 0.88 -0.9
187,928 - BACOVA_03838 0.88 -0.8
187,990 - +1.1
188,037 + +0.6
188,037 + -1.0
188,038 - -0.1
188,091 - -0.1
188,170 - BACOVA_03839 0.13 +0.3
188,180 + BACOVA_03839 0.14 +0.5
188,222 - BACOVA_03839 0.17 +0.6
188,277 + BACOVA_03839 0.21 -0.4
188,278 - BACOVA_03839 0.21 -0.8
188,327 + BACOVA_03839 0.25 +0.6
188,328 - BACOVA_03839 0.25 +0.7
188,352 + BACOVA_03839 0.27 +0.5
188,369 + BACOVA_03839 0.28 -1.3
188,369 + BACOVA_03839 0.28 +1.9
188,570 + BACOVA_03839 0.43 +1.1
188,571 - BACOVA_03839 0.43 +1.0
188,571 - BACOVA_03839 0.43 -0.1
188,574 + BACOVA_03839 0.43 +0.2
188,622 + BACOVA_03839 0.47 +2.3
188,635 + BACOVA_03839 0.48 +0.0
188,635 + BACOVA_03839 0.48 +1.1
188,680 - BACOVA_03839 0.51 +0.1
188,692 - BACOVA_03839 0.52 +1.0
188,706 - BACOVA_03839 0.53 +1.9
188,749 + BACOVA_03839 0.56 +0.1
188,750 - BACOVA_03839 0.56 -2.7
188,757 + BACOVA_03839 0.57 +0.3
188,807 + BACOVA_03839 0.60 -0.4
188,824 + BACOVA_03839 0.62 -1.0
188,846 - BACOVA_03839 0.63 +1.5
188,918 - BACOVA_03839 0.69 +1.4
188,963 + BACOVA_03839 0.72 +1.6

Or see this region's nucleotide sequence