Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02345

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02344 and MPMX26_02345 are separated by 179 nucleotidesMPMX26_02345 and MPMX26_02346 are separated by 158 nucleotidesMPMX26_02346 and MPMX26_02347 are separated by 166 nucleotides MPMX26_02344: MPMX26_02344 - Ferric enterobactin receptor, at 2,419,578 to 2,421,785 _02344 MPMX26_02345: MPMX26_02345 - Fe/S biogenesis protein NfuA, at 2,421,965 to 2,422,603 _02345 MPMX26_02346: MPMX26_02346 - Rhomboid protease GlpG, at 2,422,762 to 2,423,382 _02346 MPMX26_02347: MPMX26_02347 - Arylsulfatase, at 2,423,549 to 2,425,210 _02347 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -1 0 1at 2421.278 kb on - strand, within MPMX26_02344at 2421.948 kb on - strandat 2421.964 kb on - strandat 2421.989 kb on - strandat 2421.989 kb on - strandat 2421.998 kb on - strandat 2422.000 kb on - strandat 2422.000 kb on - strandat 2422.005 kb on - strandat 2422.006 kb on + strandat 2422.022 kb on - strandat 2422.022 kb on - strandat 2422.888 kb on + strand, within MPMX26_02346at 2422.888 kb on + strand, within MPMX26_02346at 2423.014 kb on + strand, within MPMX26_02346at 2423.031 kb on + strand, within MPMX26_02346at 2423.031 kb on + strand, within MPMX26_02346at 2423.044 kb on + strand, within MPMX26_02346at 2423.044 kb on + strand, within MPMX26_02346at 2423.134 kb on + strand, within MPMX26_02346at 2423.148 kb on + strand, within MPMX26_02346at 2423.148 kb on + strand, within MPMX26_02346at 2423.148 kb on + strand, within MPMX26_02346at 2423.215 kb on + strand, within MPMX26_02346at 2423.215 kb on + strand, within MPMX26_02346at 2423.259 kb on + strand, within MPMX26_02346at 2423.296 kb on + strand, within MPMX26_02346at 2423.305 kb on + strand, within MPMX26_02346at 2423.332 kb on + strandat 2423.332 kb on + strandat 2423.338 kb on + strandat 2423.365 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
2,421,278 - MPMX26_02344 0.77 -0.9
2,421,948 - -0.4
2,421,964 - -0.2
2,421,989 - -0.4
2,421,989 - +0.9
2,421,998 - +0.1
2,422,000 - +1.7
2,422,000 - -1.0
2,422,005 - -0.3
2,422,006 + +0.7
2,422,022 - +0.3
2,422,022 - +0.0
2,422,888 + MPMX26_02346 0.20 +0.1
2,422,888 + MPMX26_02346 0.20 -0.0
2,423,014 + MPMX26_02346 0.41 +0.1
2,423,031 + MPMX26_02346 0.43 +0.7
2,423,031 + MPMX26_02346 0.43 -0.6
2,423,044 + MPMX26_02346 0.45 +0.1
2,423,044 + MPMX26_02346 0.45 +0.8
2,423,134 + MPMX26_02346 0.60 -1.3
2,423,148 + MPMX26_02346 0.62 +0.1
2,423,148 + MPMX26_02346 0.62 -0.8
2,423,148 + MPMX26_02346 0.62 -0.1
2,423,215 + MPMX26_02346 0.73 +1.0
2,423,215 + MPMX26_02346 0.73 +1.1
2,423,259 + MPMX26_02346 0.80 +1.1
2,423,296 + MPMX26_02346 0.86 +0.7
2,423,305 + MPMX26_02346 0.87 +0.7
2,423,332 + -0.7
2,423,332 + +0.8
2,423,338 + -0.0
2,423,365 + +0.7

Or see this region's nucleotide sequence