Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01852

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01851 and MPMX26_01852 are separated by 50 nucleotidesMPMX26_01852 and MPMX26_01853 are separated by 481 nucleotides MPMX26_01851: MPMX26_01851 - putative transcriptional regulatory protein YebC, at 1,888,554 to 1,889,303 _01851 MPMX26_01852: MPMX26_01852 - DNA-binding transcriptional activator DecR, at 1,889,354 to 1,889,836 _01852 MPMX26_01853: MPMX26_01853 - hypothetical protein, at 1,890,318 to 1,891,082 _01853 Position (kb) 1889 1890Strain fitness (log2 ratio) -2 -1 0 1at 1888.563 kb on + strandat 1888.579 kb on + strandat 1888.579 kb on + strandat 1888.691 kb on + strand, within MPMX26_01851at 1888.817 kb on + strand, within MPMX26_01851at 1888.833 kb on + strand, within MPMX26_01851at 1888.866 kb on + strand, within MPMX26_01851at 1888.881 kb on + strand, within MPMX26_01851at 1888.881 kb on + strand, within MPMX26_01851at 1889.061 kb on + strand, within MPMX26_01851at 1889.097 kb on + strand, within MPMX26_01851at 1889.137 kb on + strand, within MPMX26_01851at 1889.137 kb on + strand, within MPMX26_01851at 1889.137 kb on + strand, within MPMX26_01851at 1889.145 kb on + strand, within MPMX26_01851at 1889.145 kb on + strand, within MPMX26_01851at 1889.145 kb on + strand, within MPMX26_01851at 1889.229 kb on + strandat 1889.229 kb on + strandat 1889.241 kb on + strandat 1889.250 kb on + strandat 1889.275 kb on + strandat 1889.280 kb on + strandat 1889.293 kb on - strandat 1889.371 kb on - strandat 1889.619 kb on - strand, within MPMX26_01852at 1889.621 kb on - strand, within MPMX26_01852at 1889.631 kb on - strand, within MPMX26_01852at 1889.693 kb on - strand, within MPMX26_01852at 1889.737 kb on - strand, within MPMX26_01852at 1889.739 kb on - strand, within MPMX26_01852at 1889.833 kb on - strandat 1889.979 kb on - strandat 1889.979 kb on - strandat 1890.049 kb on - strandat 1890.066 kb on - strandat 1890.087 kb on - strandat 1890.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,888,563 + +0.4
1,888,579 + -0.9
1,888,579 + -1.2
1,888,691 + MPMX26_01851 0.18 -0.0
1,888,817 + MPMX26_01851 0.35 +0.3
1,888,833 + MPMX26_01851 0.37 +0.8
1,888,866 + MPMX26_01851 0.42 -0.1
1,888,881 + MPMX26_01851 0.44 +0.2
1,888,881 + MPMX26_01851 0.44 -0.2
1,889,061 + MPMX26_01851 0.68 +0.2
1,889,097 + MPMX26_01851 0.72 -0.1
1,889,137 + MPMX26_01851 0.78 +0.0
1,889,137 + MPMX26_01851 0.78 -0.2
1,889,137 + MPMX26_01851 0.78 -0.1
1,889,145 + MPMX26_01851 0.79 +0.4
1,889,145 + MPMX26_01851 0.79 +0.2
1,889,145 + MPMX26_01851 0.79 +0.1
1,889,229 + +0.3
1,889,229 + -0.2
1,889,241 + +0.2
1,889,250 + -0.9
1,889,275 + +0.6
1,889,280 + -0.9
1,889,293 - -0.9
1,889,371 - -0.1
1,889,619 - MPMX26_01852 0.55 +0.2
1,889,621 - MPMX26_01852 0.55 -0.6
1,889,631 - MPMX26_01852 0.57 -0.1
1,889,693 - MPMX26_01852 0.70 -0.3
1,889,737 - MPMX26_01852 0.79 -0.0
1,889,739 - MPMX26_01852 0.80 -0.9
1,889,833 - +0.8
1,889,979 - +0.1
1,889,979 - -0.1
1,890,049 - +0.8
1,890,066 - -2.2
1,890,087 - -0.4
1,890,107 - -0.0

Or see this region's nucleotide sequence