Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF912 and GFF913 overlap by 1 nucleotides GFF913 and GFF914 are separated by 27 nucleotides GFF914 and GFF915 overlap by 1 nucleotides
GFF912 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 643,424 to 644,593
GFF912
GFF913 - Immune-responsive protein 1, at 644,593 to 646,017
GFF913
GFF914 - Carbonic anhydrase (EC 4.2.1.1), at 646,045 to 646,725
GFF914
GFF915 - Enoyl-CoA hydratase (EC 4.2.1.17), at 646,725 to 647,513
GFF915
Position (kb) 644
645
646
647 Strain fitness (log2 ratio) -1
0
1 at 643.660 kb on - strand, within GFF912 at 643.660 kb on - strand, within GFF912 at 643.785 kb on + strand, within GFF912 at 643.969 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.140 kb on - strand, within GFF912 at 644.374 kb on - strand, within GFF912 at 644.587 kb on + strand at 644.595 kb on - strand at 644.716 kb on + strand at 644.717 kb on - strand at 645.279 kb on - strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.299 kb on + strand, within GFF913 at 645.300 kb on - strand, within GFF913 at 645.421 kb on - strand, within GFF913 at 645.608 kb on + strand, within GFF913 at 645.608 kb on + strand, within GFF913 at 645.608 kb on + strand, within GFF913 at 645.609 kb on - strand, within GFF913 at 645.609 kb on - strand, within GFF913 at 646.088 kb on + strand at 646.089 kb on - strand at 646.161 kb on - strand, within GFF914 at 646.382 kb on - strand, within GFF914 at 646.458 kb on - strand, within GFF914 at 646.595 kb on + strand, within GFF914 at 646.595 kb on + strand, within GFF914 at 646.596 kb on - strand, within GFF914 at 646.631 kb on + strand, within GFF914 at 646.811 kb on - strand, within GFF915 at 646.969 kb on + strand, within GFF915 at 646.969 kb on + strand, within GFF915
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 643,660 - GFF912 0.20 -0.2 643,660 - GFF912 0.20 +0.2 643,785 + GFF912 0.31 +0.8 643,969 - GFF912 0.47 -1.5 644,140 - GFF912 0.61 +0.2 644,140 - GFF912 0.61 -0.0 644,140 - GFF912 0.61 -0.3 644,374 - GFF912 0.81 -0.2 644,587 + -0.2 644,595 - +1.0 644,716 + +0.5 644,717 - -0.3 645,279 - GFF913 0.48 +0.7 645,299 + GFF913 0.50 +0.6 645,299 + GFF913 0.50 -0.6 645,299 + GFF913 0.50 +0.0 645,300 - GFF913 0.50 -0.5 645,421 - GFF913 0.58 +0.0 645,608 + GFF913 0.71 +0.3 645,608 + GFF913 0.71 +0.2 645,608 + GFF913 0.71 +0.3 645,609 - GFF913 0.71 +0.4 645,609 - GFF913 0.71 +0.1 646,088 + +0.0 646,089 - +0.6 646,161 - GFF914 0.17 -0.1 646,382 - GFF914 0.49 +1.0 646,458 - GFF914 0.61 +0.3 646,595 + GFF914 0.81 -0.3 646,595 + GFF914 0.81 +1.1 646,596 - GFF914 0.81 -0.9 646,631 + GFF914 0.86 -0.0 646,811 - GFF915 0.11 +0.6 646,969 + GFF915 0.31 -0.4 646,969 + GFF915 0.31 -0.2
Or see this region's nucleotide sequence