Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF903 and GFF904 are separated by 348 nucleotides GFF904 and GFF905 are separated by 156 nucleotides GFF905 and GFF906 overlap by 4 nucleotides
GFF903 - Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, at 632,677 to 634,365
GFF903
GFF904 - Mobile element protein, at 634,714 to 634,917
GFF904
GFF905 - hypothetical protein, at 635,074 to 635,505
GFF905
GFF906 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 635,502 to 636,704
GFF906
Position (kb) 635
636 Strain fitness (log2 ratio) -1
0
1 at 634.122 kb on + strand, within GFF903 at 634.122 kb on + strand, within GFF903 at 634.141 kb on + strand, within GFF903 at 634.249 kb on + strand at 634.249 kb on + strand at 634.250 kb on - strand at 634.336 kb on + strand at 634.336 kb on + strand at 634.336 kb on + strand at 634.337 kb on - strand at 634.337 kb on - strand at 634.413 kb on + strand at 634.413 kb on + strand at 634.470 kb on - strand at 634.479 kb on - strand at 634.503 kb on + strand at 634.504 kb on - strand at 634.504 kb on - strand at 634.510 kb on + strand at 634.510 kb on + strand at 634.510 kb on + strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.542 kb on + strand at 634.626 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.631 kb on + strand at 634.648 kb on - strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.731 kb on - strand at 634.795 kb on + strand, within GFF904 at 634.795 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.810 kb on - strand, within GFF904 at 634.981 kb on + strand at 634.982 kb on - strand at 635.224 kb on + strand, within GFF905 at 635.297 kb on + strand, within GFF905 at 635.297 kb on + strand, within GFF905 at 635.373 kb on - strand, within GFF905 at 635.638 kb on + strand, within GFF906 at 635.638 kb on + strand, within GFF906 at 635.638 kb on + strand, within GFF906 at 635.722 kb on + strand, within GFF906 at 635.723 kb on - strand, within GFF906 at 635.821 kb on + strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.869 kb on + strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.942 kb on - strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.065 kb on - strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.467 kb on - strand, within GFF906 at 636.467 kb on - strand, within GFF906
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 634,122 + GFF903 0.86 +0.1 634,122 + GFF903 0.86 -0.5 634,141 + GFF903 0.87 +0.1 634,249 + +0.8 634,249 + +0.2 634,250 - -0.5 634,336 + -0.2 634,336 + +0.9 634,336 + +1.2 634,337 - -1.1 634,337 - +0.4 634,413 + -0.2 634,413 + +0.2 634,470 - +0.2 634,479 - -0.6 634,503 + +0.4 634,504 - +1.5 634,504 - -0.7 634,510 + +0.5 634,510 + +0.3 634,510 + -1.7 634,511 - +0.5 634,511 - -0.8 634,511 - -0.1 634,511 - -0.6 634,511 - -0.7 634,542 + +0.2 634,626 + -0.1 634,627 - +0.3 634,627 - -1.0 634,631 + -0.4 634,648 - -1.3 634,730 + -0.5 634,730 + +0.5 634,730 + +0.1 634,730 + -0.1 634,730 + -0.1 634,731 - -0.0 634,795 + GFF904 0.40 +0.6 634,795 + GFF904 0.40 -0.4 634,809 + GFF904 0.47 +0.0 634,809 + GFF904 0.47 -0.3 634,809 + GFF904 0.47 +1.5 634,809 + GFF904 0.47 +0.1 634,810 - GFF904 0.47 +0.4 634,981 + +0.2 634,982 - +0.9 635,224 + GFF905 0.35 -0.5 635,297 + GFF905 0.52 -1.3 635,297 + GFF905 0.52 -0.4 635,373 - GFF905 0.69 +0.1 635,638 + GFF906 0.11 +0.7 635,638 + GFF906 0.11 -1.1 635,638 + GFF906 0.11 +0.0 635,722 + GFF906 0.18 -1.7 635,723 - GFF906 0.18 -0.1 635,821 + GFF906 0.27 +0.5 635,822 - GFF906 0.27 -0.2 635,822 - GFF906 0.27 -0.2 635,822 - GFF906 0.27 +0.5 635,822 - GFF906 0.27 +0.0 635,869 + GFF906 0.31 -0.3 635,870 - GFF906 0.31 +0.1 635,870 - GFF906 0.31 +0.3 635,942 - GFF906 0.37 -0.3 635,965 + GFF906 0.38 +0.6 635,965 + GFF906 0.38 +1.1 635,965 + GFF906 0.38 +0.3 635,965 + GFF906 0.38 +0.2 635,965 + GFF906 0.38 +0.6 635,966 - GFF906 0.39 -0.1 635,966 - GFF906 0.39 -0.0 636,064 + GFF906 0.47 -0.5 636,064 + GFF906 0.47 -0.8 636,065 - GFF906 0.47 +0.2 636,466 + GFF906 0.80 -0.8 636,466 + GFF906 0.80 +0.3 636,466 + GFF906 0.80 +0.1 636,467 - GFF906 0.80 +0.2 636,467 - GFF906 0.80 +0.5
Or see this region's nucleotide sequence