Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF76 and GFF77 are separated by 91 nucleotides GFF77 and GFF78 are separated by 43 nucleotides
GFF76 - hypothetical protein, at 75,035 to 75,880
GFF76
GFF77 - hypothetical protein, at 75,972 to 77,546
GFF77
GFF78 - Hemolysin activation/secretion protein associated with VreARI signalling system, at 77,590 to 79,200
GFF78
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -1
0
1 at 75.149 kb on + strand, within GFF76 at 75.284 kb on + strand, within GFF76 at 75.296 kb on + strand, within GFF76 at 75.296 kb on + strand, within GFF76 at 75.297 kb on - strand, within GFF76 at 75.569 kb on + strand, within GFF76 at 75.569 kb on + strand, within GFF76 at 75.572 kb on + strand, within GFF76 at 75.573 kb on - strand, within GFF76 at 75.662 kb on + strand, within GFF76 at 75.810 kb on - strand at 76.169 kb on - strand, within GFF77 at 76.169 kb on - strand, within GFF77 at 76.207 kb on - strand, within GFF77 at 76.207 kb on - strand, within GFF77 at 76.207 kb on - strand, within GFF77 at 76.269 kb on + strand, within GFF77 at 76.336 kb on - strand, within GFF77 at 76.336 kb on - strand, within GFF77 at 76.369 kb on - strand, within GFF77 at 77.046 kb on + strand, within GFF77 at 77.073 kb on + strand, within GFF77 at 77.074 kb on - strand, within GFF77 at 77.074 kb on - strand, within GFF77 at 77.226 kb on + strand, within GFF77 at 77.226 kb on + strand, within GFF77 at 77.226 kb on + strand, within GFF77 at 77.227 kb on - strand, within GFF77 at 77.227 kb on - strand, within GFF77 at 77.362 kb on - strand, within GFF77 at 77.391 kb on + strand at 77.791 kb on + strand, within GFF78 at 77.986 kb on + strand, within GFF78 at 78.382 kb on + strand, within GFF78 at 78.383 kb on - strand, within GFF78
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 75,149 + GFF76 0.13 +0.3 75,284 + GFF76 0.29 -0.0 75,296 + GFF76 0.31 +0.1 75,296 + GFF76 0.31 -0.2 75,297 - GFF76 0.31 -0.8 75,569 + GFF76 0.63 +0.4 75,569 + GFF76 0.63 -0.1 75,572 + GFF76 0.63 +0.4 75,573 - GFF76 0.64 +1.0 75,662 + GFF76 0.74 +0.3 75,810 - +0.1 76,169 - GFF77 0.13 +0.6 76,169 - GFF77 0.13 -1.5 76,207 - GFF77 0.15 +0.5 76,207 - GFF77 0.15 -0.5 76,207 - GFF77 0.15 +0.3 76,269 + GFF77 0.19 +0.0 76,336 - GFF77 0.23 +0.5 76,336 - GFF77 0.23 +0.4 76,369 - GFF77 0.25 +0.2 77,046 + GFF77 0.68 +0.6 77,073 + GFF77 0.70 -1.2 77,074 - GFF77 0.70 +0.3 77,074 - GFF77 0.70 -0.2 77,226 + GFF77 0.80 +0.3 77,226 + GFF77 0.80 +0.2 77,226 + GFF77 0.80 +0.4 77,227 - GFF77 0.80 +0.7 77,227 - GFF77 0.80 +0.1 77,362 - GFF77 0.88 -0.1 77,391 + +0.6 77,791 + GFF78 0.12 +1.3 77,986 + GFF78 0.25 +0.1 78,382 + GFF78 0.49 -0.8 78,383 - GFF78 0.49 -1.1
Or see this region's nucleotide sequence