Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF702 and GFF703 are separated by 152 nucleotides GFF703 and GFF704 overlap by 4 nucleotides GFF704 and GFF705 are separated by 30 nucleotides
GFF702 - Outer membrane stress sensor protease DegS, at 380,951 to 382,429
GFF702
GFF703 - TRAP-type C4-dicarboxylate transport system, small permease component, at 382,582 to 383,130
GFF703
GFF704 - TRAP-type C4-dicarboxylate transport system, large permease component, at 383,127 to 384,425
GFF704
GFF705 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 384,456 to 385,490
GFF705
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.522 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.593 kb on + strand at 382.594 kb on - strand at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.990 kb on + strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.991 kb on - strand, within GFF703 at 382.996 kb on + strand, within GFF703 at 382.997 kb on - strand, within GFF703 at 383.038 kb on + strand, within GFF703 at 383.039 kb on - strand, within GFF703 at 383.281 kb on - strand, within GFF704 at 383.281 kb on - strand, within GFF704 at 383.298 kb on + strand, within GFF704 at 383.299 kb on - strand, within GFF704 at 383.299 kb on - strand, within GFF704 at 383.613 kb on + strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.614 kb on - strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.883 kb on + strand, within GFF704 at 383.884 kb on - strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.192 kb on + strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.193 kb on - strand, within GFF704 at 384.421 kb on - strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.543 kb on + strand at 384.544 kb on - strand at 384.544 kb on - strand at 384.555 kb on + strand at 384.663 kb on + strand, within GFF705 at 384.663 kb on + strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.664 kb on - strand, within GFF705 at 384.792 kb on + strand, within GFF705 at 384.918 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.173 kb on + strand, within GFF705 at 385.174 kb on - strand, within GFF705 at 385.174 kb on - strand, within GFF705 at 385.417 kb on - strand at 385.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 382,522 + +0.3 382,593 + +0.2 382,593 + +1.5 382,593 + -0.6 382,594 - -0.3 382,990 + GFF703 0.74 -0.0 382,990 + GFF703 0.74 -0.2 382,990 + GFF703 0.74 +0.7 382,990 + GFF703 0.74 -0.0 382,990 + GFF703 0.74 +1.6 382,991 - GFF703 0.74 -1.4 382,991 - GFF703 0.74 +0.2 382,991 - GFF703 0.74 +0.4 382,991 - GFF703 0.74 +1.0 382,991 - GFF703 0.74 -0.4 382,991 - GFF703 0.74 +0.2 382,996 + GFF703 0.75 +0.1 382,997 - GFF703 0.76 -0.3 383,038 + GFF703 0.83 -2.3 383,039 - GFF703 0.83 -1.6 383,281 - GFF704 0.12 -1.0 383,281 - GFF704 0.12 +0.8 383,298 + GFF704 0.13 +0.2 383,299 - GFF704 0.13 +0.1 383,299 - GFF704 0.13 +2.0 383,613 + GFF704 0.37 -0.9 383,614 - GFF704 0.37 +0.4 383,614 - GFF704 0.37 +0.0 383,614 - GFF704 0.37 +0.1 383,614 - GFF704 0.37 +0.4 383,614 - GFF704 0.37 +0.1 383,883 + GFF704 0.58 +0.2 383,883 + GFF704 0.58 +0.4 383,884 - GFF704 0.58 +0.7 384,192 + GFF704 0.82 -0.8 384,192 + GFF704 0.82 +0.3 384,192 + GFF704 0.82 -0.0 384,192 + GFF704 0.82 +0.8 384,192 + GFF704 0.82 -0.5 384,192 + GFF704 0.82 +0.5 384,193 - GFF704 0.82 -0.0 384,193 - GFF704 0.82 -1.0 384,193 - GFF704 0.82 +0.5 384,193 - GFF704 0.82 +0.4 384,193 - GFF704 0.82 +0.6 384,421 - -0.8 384,543 + -0.6 384,543 + +0.7 384,543 + +0.6 384,543 + +0.1 384,544 - +0.7 384,544 - -0.5 384,555 + +1.5 384,663 + GFF705 0.20 +0.6 384,663 + GFF705 0.20 -1.3 384,664 - GFF705 0.20 -0.4 384,664 - GFF705 0.20 -0.0 384,664 - GFF705 0.20 -1.1 384,664 - GFF705 0.20 +0.6 384,792 + GFF705 0.32 +0.2 384,918 + GFF705 0.45 +0.1 385,173 + GFF705 0.69 +0.5 385,173 + GFF705 0.69 +0.3 385,173 + GFF705 0.69 +0.2 385,173 + GFF705 0.69 -0.9 385,174 - GFF705 0.69 -0.3 385,174 - GFF705 0.69 +0.2 385,417 - +1.0 385,417 - -0.9
Or see this region's nucleotide sequence