Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF662

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF661 and GFF662 are separated by 0 nucleotidesGFF662 and GFF663 are separated by 81 nucleotides GFF661 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 342,901 to 344,310 GFF661 GFF662 - Ferric iron ABC transporter, ATP-binding protein, at 344,311 to 345,426 GFF662 GFF663 - Ferric iron ABC transporter, permease protein, at 345,508 to 347,115 GFF663 Position (kb) 344 345 346Strain fitness (log2 ratio) -2 -1 0 1 2at 343.414 kb on + strand, within GFF661at 343.414 kb on + strand, within GFF661at 343.414 kb on + strand, within GFF661at 343.415 kb on - strand, within GFF661at 343.415 kb on - strand, within GFF661at 343.415 kb on - strand, within GFF661at 343.936 kb on + strand, within GFF661at 343.937 kb on - strand, within GFF661at 343.937 kb on - strand, within GFF661at 343.937 kb on - strand, within GFF661at 343.937 kb on - strand, within GFF661at 343.966 kb on + strand, within GFF661at 343.975 kb on + strand, within GFF661at 343.975 kb on + strand, within GFF661at 343.976 kb on - strand, within GFF661at 344.489 kb on + strand, within GFF662at 344.489 kb on + strand, within GFF662at 344.489 kb on + strand, within GFF662at 344.489 kb on + strand, within GFF662at 344.490 kb on - strand, within GFF662at 344.490 kb on - strand, within GFF662at 344.490 kb on - strand, within GFF662at 344.490 kb on - strand, within GFF662at 344.603 kb on + strand, within GFF662at 344.603 kb on + strand, within GFF662at 344.753 kb on + strand, within GFF662at 344.754 kb on - strand, within GFF662at 344.763 kb on - strand, within GFF662at 344.763 kb on - strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.440 kb on + strandat 345.440 kb on + strandat 345.440 kb on + strandat 345.440 kb on + strandat 345.441 kb on - strandat 345.444 kb on + strandat 345.445 kb on - strandat 345.445 kb on - strandat 345.445 kb on - strandat 345.448 kb on + strandat 345.448 kb on + strandat 345.448 kb on + strandat 345.449 kb on - strandat 345.449 kb on - strandat 345.655 kb on + strandat 345.655 kb on + strandat 345.805 kb on + strand, within GFF663at 345.805 kb on + strand, within GFF663at 345.806 kb on - strand, within GFF663at 345.806 kb on - strand, within GFF663at 345.817 kb on + strand, within GFF663at 345.817 kb on + strand, within GFF663at 345.818 kb on - strand, within GFF663at 345.823 kb on + strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.956 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 346.147 kb on + strand, within GFF663at 346.148 kb on - strand, within GFF663at 346.148 kb on - strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.181 kb on - strand, within GFF663at 346.181 kb on - strand, within GFF663

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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343,414 + GFF661 0.36 +0.3
343,414 + GFF661 0.36 -0.1
343,414 + GFF661 0.36 +1.1
343,415 - GFF661 0.36 +0.6
343,415 - GFF661 0.36 +0.2
343,415 - GFF661 0.36 -0.2
343,936 + GFF661 0.73 +2.7
343,937 - GFF661 0.73 +0.7
343,937 - GFF661 0.73 +0.1
343,937 - GFF661 0.73 -0.6
343,937 - GFF661 0.73 +1.2
343,966 + GFF661 0.76 -0.6
343,975 + GFF661 0.76 -0.6
343,975 + GFF661 0.76 -0.2
343,976 - GFF661 0.76 +1.2
344,489 + GFF662 0.16 -0.1
344,489 + GFF662 0.16 +0.0
344,489 + GFF662 0.16 -0.2
344,489 + GFF662 0.16 -0.7
344,490 - GFF662 0.16 -0.4
344,490 - GFF662 0.16 -1.5
344,490 - GFF662 0.16 -1.8
344,490 - GFF662 0.16 +0.4
344,603 + GFF662 0.26 -0.2
344,603 + GFF662 0.26 -0.7
344,753 + GFF662 0.40 -1.0
344,754 - GFF662 0.40 +0.2
344,763 - GFF662 0.41 -0.4
344,763 - GFF662 0.41 -1.0
345,161 + GFF662 0.76 -1.4
345,161 + GFF662 0.76 -1.3
345,161 + GFF662 0.76 -0.7
345,161 + GFF662 0.76 -0.4
345,161 + GFF662 0.76 -1.0
345,162 - GFF662 0.76 +0.5
345,162 - GFF662 0.76 -0.6
345,162 - GFF662 0.76 +0.1
345,440 + -0.7
345,440 + -0.1
345,440 + +1.1
345,440 + -1.0
345,441 - -0.4
345,444 + +0.1
345,445 - -0.4
345,445 - -0.1
345,445 - -0.3
345,448 + +0.1
345,448 + -0.6
345,448 + -0.3
345,449 - +0.4
345,449 - -1.3
345,655 + -0.6
345,655 + -1.3
345,805 + GFF663 0.18 -1.0
345,805 + GFF663 0.18 -0.4
345,806 - GFF663 0.19 -0.8
345,806 - GFF663 0.19 +0.3
345,817 + GFF663 0.19 -0.1
345,817 + GFF663 0.19 -0.1
345,818 - GFF663 0.19 -1.9
345,823 + GFF663 0.20 -0.1
345,824 - GFF663 0.20 -1.0
345,824 - GFF663 0.20 -1.2
345,824 - GFF663 0.20 -1.0
345,956 + GFF663 0.28 -0.7
345,958 + GFF663 0.28 +0.1
345,958 + GFF663 0.28 -0.2
345,958 + GFF663 0.28 -0.6
345,958 + GFF663 0.28 -0.7
345,958 + GFF663 0.28 -0.2
345,958 + GFF663 0.28 -1.4
345,959 - GFF663 0.28 -2.0
345,959 - GFF663 0.28 -1.0
345,959 - GFF663 0.28 +0.1
345,959 - GFF663 0.28 -0.2
345,964 + GFF663 0.28 -0.4
345,964 + GFF663 0.28 -2.3
345,964 + GFF663 0.28 +0.8
345,965 - GFF663 0.28 -0.8
345,965 - GFF663 0.28 -0.2
345,965 - GFF663 0.28 -0.4
345,965 - GFF663 0.28 -0.4
345,965 - GFF663 0.28 -0.6
346,147 + GFF663 0.40 -0.1
346,148 - GFF663 0.40 -0.5
346,148 - GFF663 0.40 -0.3
346,180 + GFF663 0.42 -0.0
346,180 + GFF663 0.42 -0.5
346,180 + GFF663 0.42 +0.6
346,180 + GFF663 0.42 -0.5
346,181 - GFF663 0.42 -0.8
346,181 - GFF663 0.42 -0.9

Or see this region's nucleotide sequence