Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5735

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,763,899	+		GFF5734	0.68	-1.4
2,764,037	+		GFF5734	0.83	-3.9
2,764,154	+				-1.2
2,764,155	-				-3.6
2,764,193	+				+0.3
2,764,194	-				-0.7
2,764,196	+				+0.2
2,764,196	+				+0.6
2,764,197	-				+0.8
2,764,604	+		GFF5735	0.44	-0.6
2,764,604	+		GFF5735	0.44	-3.0
2,764,604	+		GFF5735	0.44	+0.5
2,764,605	-		GFF5735	0.44	-2.7
2,764,605	-		GFF5735	0.44	-0.5
2,764,605	-		GFF5735	0.44	-1.2
2,764,605	-		GFF5735	0.44	+0.1
2,764,619	+		GFF5735	0.45	-0.1
2,764,620	-		GFF5735	0.45	-0.0
2,764,620	-		GFF5735	0.45	-2.9
2,764,620	-		GFF5735	0.45	+0.3
2,764,875	+		GFF5735	0.72	-0.7
2,764,877	+		GFF5735	0.73	-0.5
2,764,877	+		GFF5735	0.73	+0.1
2,764,877	+		GFF5735	0.73	-0.3
2,764,878	-		GFF5735	0.73	-1.8
2,764,878	-		GFF5735	0.73	-0.8
2,764,878	-		GFF5735	0.73	-1.3
2,764,878	-		GFF5735	0.73	-0.4
2,764,878	-		GFF5735	0.73	-0.8
2,764,878	-		GFF5735	0.73	-1.1
2,764,937	+		GFF5735	0.79	-1.7
2,764,937	+		GFF5735	0.79	-1.9
2,764,937	+		GFF5735	0.79	-0.9
2,764,937	+		GFF5735	0.79	-1.0
2,764,937	+		GFF5735	0.79	-1.4
2,764,937	+		GFF5735	0.79	-0.7
2,764,938	-		GFF5735	0.79	+0.3
2,764,938	-		GFF5735	0.79	+0.5
2,765,144	+				-0.7
2,765,144	+				-0.8
2,765,145	-				-1.0
2,765,145	-				-0.5
2,765,145	-				+0.1
2,765,145	-				-0.8
2,765,196	+				+0.1
2,765,197	-				-0.3
2,765,215	-				-0.6
2,765,277	+		GFF5736	0.12	-1.4
2,765,289	+		GFF5736	0.13	-0.2
2,765,289	+		GFF5736	0.13	-0.3
2,765,355	+		GFF5736	0.23	-1.0
2,765,355	+		GFF5736	0.23	-0.5
2,765,355	-		GFF5736	0.23	-0.9
2,765,356	-		GFF5736	0.23	-1.8
2,765,356	-		GFF5736	0.23	+0.6
2,765,356	-		GFF5736	0.23	+0.2
2,765,469	+		GFF5736	0.39	-0.3
2,765,469	+		GFF5736	0.39	-0.6
2,765,469	+		GFF5736	0.39	-0.4
2,765,469	+		GFF5736	0.39	+0.2
2,765,470	-		GFF5736	0.39	-0.1
2,765,470	-		GFF5736	0.39	-0.4
2,765,470	-		GFF5736	0.39	-0.2
2,765,470	-		GFF5736	0.39	-0.4
2,765,880	+				-0.1
2,765,880	+				+0.3
2,765,880	+				-0.1
2,765,892	+				-0.0
2,765,893	-				-0.3
2,765,893	-				+0.4
2,765,893	-				+1.0
2,765,893	-				-1.2
2,765,972	+				-0.2
2,766,026	+		GFF5737	0.15	-2.6
2,766,026	+		GFF5737	0.15	-2.5
2,766,027	-		GFF5737	0.16	-1.5
2,766,029	+		GFF5737	0.16	-3.4
2,766,029	+		GFF5737	0.16	-1.7
2,766,029	+		GFF5737	0.16	-2.5
2,766,029	+		GFF5737	0.16	-0.3
2,766,029	+		GFF5737	0.16	-1.4
2,766,029	+		GFF5737	0.16	-2.3
2,766,030	-		GFF5737	0.17	-1.9
2,766,030	-		GFF5737	0.17	-1.1