Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5678

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,699,245	-		GFF5677	0.42	-0.1
2,699,307	+		GFF5677	0.47	+0.5
2,699,577	+		GFF5677	0.69	-0.6
2,699,578	-		GFF5677	0.69	-1.8
2,699,700	+		GFF5677	0.79	-0.0
2,699,701	-		GFF5677	0.79	+1.0
2,700,154	+		GFF5678	0.34	-1.5
2,700,178	+		GFF5678	0.38	+0.6
2,700,184	+		GFF5678	0.39	-1.2
2,700,184	+		GFF5678	0.39	-0.7
2,700,185	-		GFF5678	0.39	+0.7
2,700,185	-		GFF5678	0.39	+0.1
2,700,185	-		GFF5678	0.39	+1.1
2,700,246	+		GFF5678	0.50	+0.4
2,700,295	+		GFF5678	0.58	-0.1
2,700,342	+		GFF5678	0.66	-0.1
2,700,342	+		GFF5678	0.66	+0.6
2,700,608	+				+0.5
2,700,613	-				-0.7
2,700,613	-				+0.7
2,700,664	+				+0.6
2,700,910	+		GFF5679	0.19	+0.9
2,700,910	+		GFF5679	0.19	-0.1
2,700,910	+		GFF5679	0.19	+0.6
2,700,911	-		GFF5679	0.19	+0.9
2,701,003	+		GFF5679	0.39	-0.2
2,701,003	+		GFF5679	0.39	+0.1
2,701,003	+		GFF5679	0.39	+0.6
2,701,004	-		GFF5679	0.39	+0.0
2,701,421	+				-0.5
2,701,455	+				+0.7
2,701,455	+				-0.4
2,701,520	-				+0.1
2,701,533	+				+0.2
2,701,533	+				+0.4
2,701,533	+				+0.4
2,701,533	+				+0.2
2,701,533	+				-0.1
2,701,533	+				-0.6
2,701,533	+				+0.3
2,701,533	+				+0.1
2,701,533	+				-0.7
2,701,533	+				+0.4