Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5506

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,506,705	+		GFF5505	0.27	-0.2
2,506,705	+		GFF5505	0.27	+0.1
2,506,762	+		GFF5505	0.32	-0.6
2,506,763	-		GFF5505	0.32	+0.5
2,506,777	+		GFF5505	0.34	-0.2
2,506,777	+		GFF5505	0.34	+0.4
2,506,777	+		GFF5505	0.34	-0.2
2,506,778	-		GFF5505	0.34	+0.1
2,506,779	+		GFF5505	0.34	-0.4
2,506,805	-		GFF5505	0.37	+0.8
2,507,556	+				-0.5
2,507,556	+				-0.2
2,507,557	-				+0.2
2,507,557	-				-0.4
2,507,557	-				-0.1
2,507,895	+		GFF5506	0.32	+0.5
2,507,895	+		GFF5506	0.32	+0.9
2,507,896	-		GFF5506	0.32	-0.4
2,507,896	-		GFF5506	0.32	-0.4
2,507,896	-		GFF5506	0.32	+1.7
2,507,970	+		GFF5506	0.37	+0.1
2,507,970	+		GFF5506	0.37	-0.0
2,508,024	+		GFF5506	0.42	+0.4
2,508,480	+		GFF5506	0.77	-0.7
2,508,480	+		GFF5506	0.77	+0.5
2,509,606	+		GFF5508	0.53	-0.3