Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5448

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,449,438	+				-0.4
2,449,446	+				+0.5
2,449,447	-				-1.1
2,449,814	+		GFF5447	0.42	-0.3
2,449,814	+		GFF5447	0.42	+0.4
2,449,815	-		GFF5447	0.42	+0.1
2,449,899	-		GFF5447	0.52	-0.8
2,450,135	+		GFF5447	0.81	+0.1
2,450,434	+		GFF5448	0.13	+0.1
2,450,566	+		GFF5448	0.27	-0.4
2,450,567	-		GFF5448	0.27	-0.8
2,451,333	+				+0.5
2,451,333	+				-0.2
2,451,351	-				+0.5
2,451,437	+				+0.2
2,451,437	+				-1.1
2,452,031	+		GFF5449	0.48	-1.2
2,452,031	+		GFF5449	0.48	-0.4