Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5422

Experiment: Ying_Nucleobase14 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5421 and GFF5422 are separated by 8 nucleotidesGFF5422 and GFF5423 are separated by 7 nucleotidesGFF5423 and GFF5424 are separated by 26 nucleotides GFF5421 - Tricarboxylate transport protein TctC, at 2,423,099 to 2,424,082 GFF5421 GFF5422 - ABC transporter, ATP-binding protein, at 2,424,091 to 2,424,810 GFF5422 GFF5423 - hypothetical protein, at 2,424,818 to 2,425,009 GFF5423 GFF5424 - two-component system sensor kinase, at 2,425,036 to 2,426,892 GFF5424 Position (kb) 2424 2425Strain fitness (log2 ratio) -1 0 1at 2423.835 kb on - strand, within GFF5421at 2424.738 kb on - strand, within GFF5422at 2425.634 kb on + strand, within GFF5424at 2425.739 kb on + strand, within GFF5424at 2425.739 kb on + strand, within GFF5424

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2
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2,423,835 - GFF5421 0.75 +0.6
2,424,738 - GFF5422 0.90 +0.2
2,425,634 + GFF5424 0.32 +0.7
2,425,739 + GFF5424 0.38 +0.8
2,425,739 + GFF5424 0.38 +0.3

Or see this region's nucleotide sequence