Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5375

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,376,525	+				-1.1
2,376,526	-				-1.0
2,376,526	-				-1.6
2,376,963	+		GFF5374	0.56	-1.3
2,376,963	+		GFF5374	0.56	+0.7
2,376,964	-		GFF5374	0.56	-0.1
2,377,033	-		GFF5374	0.65	+0.7
2,377,205	-		GFF5374	0.86	-0.2
2,377,377	-				-1.3
2,377,407	+				+0.3
2,377,407	+				-0.3
2,377,408	-				+0.4
2,377,408	-				+0.6
2,377,408	-				-0.4
2,377,769	+		GFF5375	0.50	-0.1
2,377,770	-		GFF5375	0.50	-0.1
2,377,770	-		GFF5375	0.50	-0.1
2,377,781	+		GFF5375	0.52	-0.8
2,377,896	-		GFF5375	0.64	-0.4
2,378,360	+				+0.3
2,378,459	-				+0.7
2,379,067	-		GFF5376	0.59	-0.3