Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5213

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,226,821	+				+0.0
2,226,821	+				+0.5
2,226,821	+				+1.0
2,226,822	-				+0.1
2,226,822	-				+1.1
2,226,822	-				-0.1
2,227,119	-		GFF5211	0.35	-0.3
2,227,467	-				-0.1
2,227,600	-				-0.1
2,227,679	+				-0.2
2,227,680	-				+0.1
2,227,849	-				-1.4
2,228,080	+		GFF5213	0.28	-0.4
2,228,478	+		GFF5213	0.63	-0.3
2,228,877	+				-0.9
2,228,941	-				+0.1
2,229,120	+		GFF5214	0.52	+0.7
2,229,120	+		GFF5214	0.52	+0.5
2,229,120	+		GFF5214	0.52	+1.3
2,229,120	+		GFF5214	0.52	+0.6
2,229,121	-		GFF5214	0.52	-0.3
2,229,274	-				+0.3
2,229,662	+		GFF5215	0.12	-0.7
2,229,663	-		GFF5215	0.12	-0.0
2,229,663	-		GFF5215	0.12	+0.4
2,229,671	+		GFF5215	0.12	-0.0
2,229,672	-		GFF5215	0.12	-0.3
2,229,672	-		GFF5215	0.12	-0.9
2,229,672	-		GFF5215	0.12	+0.2
2,229,680	+		GFF5215	0.12	+0.1