Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5030

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
2,043,401	+		GFF5029	0.38	+0.6
2,043,732	-		GFF5029	0.70	+0.6
2,043,738	-		GFF5029	0.70	-0.0
2,043,740	+		GFF5029	0.70	+0.1
2,043,740	+		GFF5029	0.70	+0.9
2,043,741	-		GFF5029	0.71	+0.4
2,043,741	-		GFF5029	0.71	-0.0
2,043,741	-		GFF5029	0.71	+0.1
2,043,741	-		GFF5029	0.71	+0.5
2,043,912	-		GFF5029	0.87	-0.0
2,044,642	-		GFF5030	0.53	+1.1
2,044,680	+		GFF5030	0.57	+0.4
2,044,681	-		GFF5030	0.57	-0.3
2,044,849	-		GFF5030	0.72	-0.0
2,044,852	-		GFF5030	0.72	-1.2
2,044,870	-		GFF5030	0.74	+0.4
2,045,258	+				-1.2
2,045,258	+				-0.3
2,045,297	+		GFF5031	0.11	+0.7
2,045,759	+		GFF5031	0.51	-0.2
2,045,759	+		GFF5031	0.51	+0.1
2,045,760	-		GFF5031	0.51	-0.6
2,045,760	-		GFF5031	0.51	+0.1
2,045,760	-		GFF5031	0.51	+0.0
2,045,760	-		GFF5031	0.51	+0.6
2,046,147	-		GFF5031	0.84	+0.2
2,046,147	-		GFF5031	0.84	+0.3
2,046,147	-		GFF5031	0.84	+0.2