Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4743

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,711,743	+		GFF4742	0.73	+0.3
1,711,744	-		GFF4742	0.73	+0.9
1,711,744	-		GFF4742	0.73	-2.1
1,711,744	-		GFF4742	0.73	-0.1
1,711,821	+		GFF4742	0.84	-0.6
1,711,821	+		GFF4742	0.84	-0.4
1,711,822	-		GFF4742	0.84	+0.2
1,711,890	+				+0.3
1,711,890	+				+0.3
1,711,890	+				-0.7
1,711,891	-				+0.4
1,712,007	+				+0.4
1,712,007	+				+0.2
1,712,008	-				-0.3
1,712,008	-				-0.7
1,712,300	+		GFF4743	0.11	-0.0
1,712,300	+		GFF4743	0.11	+1.5
1,712,300	+		GFF4743	0.11	+0.0
1,712,300	+		GFF4743	0.11	+0.5
1,712,300	+		GFF4743	0.11	+0.1
1,712,301	-		GFF4743	0.11	-0.7
1,712,375	+		GFF4743	0.13	-0.0
1,712,375	+		GFF4743	0.13	+0.1
1,712,735	-		GFF4743	0.24	-1.6
1,713,083	+		GFF4743	0.35	+0.6
1,713,083	+		GFF4743	0.35	-1.9
1,713,084	-		GFF4743	0.35	+0.3
1,713,084	-		GFF4743	0.35	-0.1
1,713,242	+		GFF4743	0.40	+1.5
1,713,243	-		GFF4743	0.40	+1.2
1,713,243	-		GFF4743	0.40	+0.3
1,713,252	-		GFF4743	0.40	+0.4
1,713,252	-		GFF4743	0.40	-0.5
1,713,252	-		GFF4743	0.40	-0.2
1,713,252	-		GFF4743	0.40	+0.6
1,713,422	+		GFF4743	0.45	-0.3
1,713,423	-		GFF4743	0.45	+0.7
1,713,423	-		GFF4743	0.45	+0.3
1,713,464	+		GFF4743	0.46	+0.3
1,713,464	+		GFF4743	0.46	+1.7
1,713,464	+		GFF4743	0.46	-0.7
1,713,464	+		GFF4743	0.46	-0.1
1,713,464	+		GFF4743	0.46	-0.1
1,713,464	+		GFF4743	0.46	+1.0
1,713,465	-		GFF4743	0.46	+0.9
1,713,465	-		GFF4743	0.46	-0.1
1,713,465	-		GFF4743	0.46	+0.5
1,713,465	-		GFF4743	0.46	+0.2
1,713,611	+		GFF4743	0.51	-0.8
1,713,861	-		GFF4743	0.58	+0.7
1,714,313	+		GFF4743	0.72	+0.8
1,714,524	-		GFF4743	0.78	+0.4
1,714,532	+		GFF4743	0.79	-0.1
1,714,533	-		GFF4743	0.79	-0.0
1,714,958	+				-0.1
1,714,958	+				+1.2
1,714,958	+				+1.1
1,714,959	-				+0.0
1,714,959	-				+0.6
1,714,959	-				+0.3
1,715,680	+				+0.2
1,715,680	+				-0.1
1,715,680	+				-0.4
1,715,680	+				+0.4
1,715,680	+				+0.3
1,715,681	-				-0.6
1,715,681	-				+0.3
1,715,681	-				-0.5
1,715,681	-				-1.3
1,715,681	-				-0.1
1,715,681	-				-0.2
1,715,749	+		GFF4744	0.11	-1.5
1,715,900	-		GFF4744	0.14	-0.2