Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4655

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,605,641	+		GFF4654	0.25	+0.4
1,605,642	-		GFF4654	0.25	+0.3
1,605,657	-		GFF4654	0.26	+0.6
1,605,657	-		GFF4654	0.26	-0.3
1,605,735	-		GFF4654	0.33	+0.3
1,605,736	-		GFF4654	0.33	+0.1
1,605,848	+		GFF4654	0.44	+0.1
1,605,849	-		GFF4654	0.44	+0.1
1,605,977	+		GFF4654	0.55	+0.1
1,605,977	+		GFF4654	0.55	+0.1
1,606,094	-		GFF4654	0.66	+0.7
1,606,094	-		GFF4654	0.66	-0.2
1,606,097	+		GFF4654	0.66	+0.2
1,606,097	+		GFF4654	0.66	-0.2
1,606,098	-		GFF4654	0.66	+0.0
1,606,121	+		GFF4654	0.68	+0.6
1,606,121	+		GFF4654	0.68	-0.1
1,606,122	-		GFF4654	0.69	-1.1
1,606,122	-		GFF4654	0.69	-0.9
1,606,139	+		GFF4654	0.70	+0.4
1,606,172	+		GFF4654	0.73	+1.5
1,606,172	+		GFF4654	0.73	-0.9
1,606,463	+				-0.3
1,606,496	+				-0.3
1,606,496	+				+0.3
1,606,496	+				+0.3
1,606,497	-				+0.1
1,606,497	-				-0.1
1,606,514	+				-0.0
1,606,514	+				-0.5
1,606,820	+		GFF4655	0.36	+0.2
1,606,820	+		GFF4655	0.36	+0.3
1,606,820	+		GFF4655	0.36	-0.1
1,606,820	+		GFF4655	0.36	+1.9
1,606,820	+		GFF4655	0.36	+0.6
1,606,820	+		GFF4655	0.36	-0.8
1,606,821	-		GFF4655	0.36	+1.4
1,606,843	+		GFF4655	0.38	+0.4
1,606,843	+		GFF4655	0.38	+0.2
1,606,843	+		GFF4655	0.38	+0.7
1,606,893	-		GFF4655	0.44	-0.2
1,606,893	-		GFF4655	0.44	+0.9
1,607,090	+		GFF4655	0.65	+0.6
1,607,090	+		GFF4655	0.65	-0.3
1,607,090	+		GFF4655	0.65	-0.0
1,607,090	+		GFF4655	0.65	+0.1
1,607,091	-		GFF4655	0.65	+0.8
1,607,117	+		GFF4655	0.68	+0.5
1,607,118	-		GFF4655	0.68	+0.4
1,607,118	-		GFF4655	0.68	-0.3
1,607,276	+		GFF4655	0.85	+0.3
1,607,277	-		GFF4655	0.85	+0.2
1,608,210	+		GFF4656	0.69	-1.1
1,608,211	-		GFF4656	0.70	-0.6
1,608,211	-		GFF4656	0.70	+0.3
1,608,211	-		GFF4656	0.70	+1.8
1,608,211	-		GFF4656	0.70	+0.4
1,608,318	+		GFF4656	0.79	+0.5