Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4335

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,263,560	-				+2.0
1,263,560	-				-1.1
1,263,583	+				-1.8
1,263,584	-				+0.7
1,263,610	+				-0.7
1,263,610	+				-0.0
1,263,611	-				-1.4
1,263,611	-				+0.2
1,263,685	+		GFF4335	0.12	+0.2
1,263,685	+		GFF4335	0.12	-0.2
1,263,685	+		GFF4335	0.12	-0.4
1,263,685	+		GFF4335	0.12	-0.2
1,263,685	+		GFF4335	0.12	+0.2
1,263,686	-		GFF4335	0.12	+0.1
1,263,686	-		GFF4335	0.12	-0.0
1,263,784	+		GFF4335	0.17	+0.4
1,263,785	-		GFF4335	0.18	-0.1
1,263,785	-		GFF4335	0.18	+0.1
1,263,943	+		GFF4335	0.26	-1.2
1,263,943	+		GFF4335	0.26	+0.3
1,264,143	+		GFF4335	0.37	-0.3
1,264,144	+		GFF4335	0.37	-0.0
1,264,144	+		GFF4335	0.37	+0.4
1,264,183	+		GFF4335	0.39	-0.3
1,264,183	+		GFF4335	0.39	-0.2
1,264,183	+		GFF4335	0.39	+0.0
1,264,183	+		GFF4335	0.39	-0.8
1,264,183	+		GFF4335	0.39	+0.1
1,264,183	+		GFF4335	0.39	-0.5
1,264,184	-		GFF4335	0.39	+0.9
1,264,184	-		GFF4335	0.39	-1.8
1,264,184	-		GFF4335	0.39	-1.0
1,264,184	-		GFF4335	0.39	+0.4
1,264,184	-		GFF4335	0.39	-1.0
1,264,184	-		GFF4335	0.39	+0.2
1,264,184	-		GFF4335	0.39	+0.3
1,264,184	-		GFF4335	0.39	-0.3
1,264,202	-		GFF4335	0.40	+0.2
1,264,267	+		GFF4335	0.43	+0.5
1,264,267	+		GFF4335	0.43	+0.5
1,264,267	+		GFF4335	0.43	-0.6
1,264,267	+		GFF4335	0.43	+0.1
1,264,267	+		GFF4335	0.43	+0.3
1,264,330	+		GFF4335	0.47	+1.9
1,264,330	+		GFF4335	0.47	+0.8
1,264,435	+		GFF4335	0.53	-0.4
1,264,436	-		GFF4335	0.53	-1.1
1,264,436	-		GFF4335	0.53	+0.3
1,264,534	+		GFF4335	0.58	-0.2
1,264,669	+		GFF4335	0.65	-0.0
1,264,669	+		GFF4335	0.65	+0.6
1,264,669	+		GFF4335	0.65	+0.5
1,264,669	+		GFF4335	0.65	-0.5
1,264,670	-		GFF4335	0.65	-0.7
1,264,670	-		GFF4335	0.65	-0.8
1,264,670	-		GFF4335	0.65	-0.9
1,264,670	-		GFF4335	0.65	-0.5
1,264,670	-		GFF4335	0.65	-0.5
1,264,670	-		GFF4335	0.65	+1.5
1,264,670	-		GFF4335	0.65	+0.2
1,264,759	+		GFF4335	0.70	-0.3
1,264,810	+		GFF4335	0.73	-0.5
1,264,810	+		GFF4335	0.73	-0.2
1,264,810	+		GFF4335	0.73	-1.1
1,264,811	-		GFF4335	0.73	-0.1
1,264,915	+		GFF4335	0.78	-0.6
1,264,916	-		GFF4335	0.78	-0.2
1,264,936	+		GFF4335	0.79	-1.8
1,264,937	-		GFF4335	0.80	-0.1
1,265,039	-		GFF4335	0.85	-1.2
1,265,039	-		GFF4335	0.85	+0.7
1,265,039	-		GFF4335	0.85	-0.1
1,265,039	-		GFF4335	0.85	+0.0
1,265,165	-				-0.7
1,265,165	-				+0.1
1,265,165	-				-0.0
1,265,189	-				-0.2
1,265,189	-				+0.5
1,265,189	-				+0.5
1,265,189	-				-0.8
1,265,206	+				-0.6
1,265,322	+				+0.8
1,265,322	+				-0.9
1,265,322	+				-0.5
1,265,322	+				+0.6
1,265,323	-				-0.4
1,265,323	-				-0.6
1,265,323	-				-1.5
1,265,424	+		GFF4336	0.13	-0.4
1,265,424	+		GFF4336	0.13	+0.2
1,265,424	+		GFF4336	0.13	+0.8
1,265,424	+		GFF4336	0.13	+0.3
1,265,424	+		GFF4336	0.13	-0.2
1,265,424	+		GFF4336	0.13	-0.2
1,265,424	+		GFF4336	0.13	-0.2
1,265,424	+		GFF4336	0.13	-0.0
1,265,425	-		GFF4336	0.13	-0.2
1,265,425	-		GFF4336	0.13	-0.3
1,265,425	-		GFF4336	0.13	+1.0
1,265,425	-		GFF4336	0.13	+0.1
1,265,425	-		GFF4336	0.13	-1.5
1,265,425	-		GFF4336	0.13	+0.1
1,265,544	+		GFF4336	0.24	-0.3
1,265,544	+		GFF4336	0.24	-0.8
1,265,544	+		GFF4336	0.24	-0.0
1,265,544	+		GFF4336	0.24	-0.7
1,265,545	-		GFF4336	0.25	-0.3
1,265,545	-		GFF4336	0.25	+0.1
1,265,799	+		GFF4336	0.48	-0.2
1,265,799	+		GFF4336	0.48	+0.1
1,265,799	+		GFF4336	0.48	-1.8
1,265,931	+		GFF4336	0.61	-0.5
1,265,932	-		GFF4336	0.61	-0.1
1,266,037	-		GFF4336	0.71	+1.3
1,266,037	-		GFF4336	0.71	+1.5
1,266,037	-		GFF4336	0.71	+0.1
1,266,216	+		GFF4336	0.87	+0.7
1,266,216	+		GFF4336	0.87	-0.6
1,266,315	+				-1.0
1,266,315	+				+0.0
1,266,315	+				+0.2
1,266,315	+				-0.8
1,266,315	+				+0.3
1,266,316	-				-1.0
1,266,316	-				+0.6
1,266,316	-				-1.0