Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4322

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,249,716	-				-0.7
1,250,083	-		GFF4321	0.43	-1.3
1,250,130	+		GFF4321	0.49	-1.0
1,250,130	+		GFF4321	0.49	-0.3
1,250,131	-		GFF4321	0.49	-0.7
1,250,131	-		GFF4321	0.49	-1.2
1,250,131	-		GFF4321	0.49	-0.3
1,250,223	+		GFF4321	0.60	-0.2
1,250,224	-		GFF4321	0.60	-0.3
1,250,224	-		GFF4321	0.60	-0.1
1,250,224	-		GFF4321	0.60	-1.0
1,250,353	-		GFF4321	0.76	-1.0
1,250,353	-		GFF4321	0.76	-0.3
1,250,353	-		GFF4321	0.76	-1.0
1,250,421	+		GFF4321	0.84	-0.8
1,250,421	+		GFF4321	0.84	-0.9
1,250,421	+		GFF4321	0.84	-0.8
1,250,421	+		GFF4321	0.84	+0.1
1,250,421	+		GFF4321	0.84	-1.6
1,250,421	+		GFF4321	0.84	-0.7
1,250,422	-		GFF4321	0.84	-0.4
1,250,422	-		GFF4321	0.84	+0.3
1,250,422	-		GFF4321	0.84	-1.4
1,250,422	-		GFF4321	0.84	+0.2
1,250,422	-		GFF4321	0.84	-1.5
1,250,545	+				-0.4
1,250,545	+				+0.5
1,250,546	-				+1.5
1,250,546	-				+0.1
1,250,546	-				-2.2
1,250,546	-				-0.1
1,250,546	-				-0.7
1,250,721	-		GFF4322	0.17	+0.1
1,251,068	+		GFF4322	0.51	-0.7
1,251,068	+		GFF4322	0.51	+0.4
1,251,218	+		GFF4322	0.66	-0.3
1,251,218	+		GFF4322	0.66	+0.1
1,251,218	+		GFF4322	0.66	-0.0
1,251,218	+		GFF4322	0.66	-0.0
1,251,219	-		GFF4322	0.66	+1.2
1,251,219	-		GFF4322	0.66	-0.1
1,251,219	-		GFF4322	0.66	+0.6
1,251,219	-		GFF4322	0.66	+0.4
1,251,219	-		GFF4322	0.66	+0.9
1,251,353	+		GFF4322	0.80	+0.5
1,251,353	+		GFF4322	0.80	-1.8
1,251,353	+		GFF4322	0.80	-1.0
1,251,758	+		GFF4323	0.22	-0.6
1,251,758	+		GFF4323	0.22	-0.6
1,251,758	+		GFF4323	0.22	-0.5
1,251,758	+		GFF4323	0.22	-0.0
1,251,759	-		GFF4323	0.22	+1.2
1,251,759	-		GFF4323	0.22	-0.2
1,251,995	+		GFF4323	0.48	-0.7
1,252,287	-		GFF4323	0.79	-0.0
1,252,379	+		GFF4323	0.89	-1.4
1,252,379	+		GFF4323	0.89	-0.1
1,252,379	+		GFF4323	0.89	-0.2
1,252,379	+		GFF4323	0.89	-0.5
1,252,379	+		GFF4323	0.89	-1.0
1,252,379	+		GFF4323	0.89	+0.2
1,252,379	+		GFF4323	0.89	-0.2
1,252,380	-		GFF4323	0.89	+0.5
1,252,380	-		GFF4323	0.89	-0.3
1,252,380	-		GFF4323	0.89	-0.1