Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4189

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,105,020	+		GFF4188	0.21	-0.9
1,105,020	+		GFF4188	0.21	+0.2
1,105,020	+		GFF4188	0.21	+0.6
1,105,020	+		GFF4188	0.21	+0.1
1,105,020	+		GFF4188	0.21	+1.8
1,105,021	-		GFF4188	0.21	-0.2
1,105,021	-		GFF4188	0.21	-2.0
1,105,021	-		GFF4188	0.21	-0.2
1,105,139	+		GFF4188	0.34	-0.2
1,105,140	+		GFF4188	0.34	-0.6
1,105,140	+		GFF4188	0.34	+0.4
1,105,140	+		GFF4188	0.34	+0.9
1,105,140	+		GFF4188	0.34	-0.2
1,105,140	+		GFF4188	0.34	+0.1
1,105,140	+		GFF4188	0.34	-0.0
1,105,140	+		GFF4188	0.34	-0.9
1,105,141	-		GFF4188	0.34	+0.7
1,105,141	-		GFF4188	0.34	+0.4
1,105,141	-		GFF4188	0.34	-0.6
1,105,141	-		GFF4188	0.34	-0.4
1,105,141	-		GFF4188	0.34	+0.5
1,105,143	+		GFF4188	0.35	-0.1
1,105,143	+		GFF4188	0.35	+0.2
1,105,143	+		GFF4188	0.35	-0.0
1,105,144	-		GFF4188	0.35	+0.8
1,105,144	-		GFF4188	0.35	+1.2
1,105,144	-		GFF4188	0.35	-0.1
1,105,208	-		GFF4188	0.42	-0.2
1,105,338	+		GFF4188	0.56	-0.4
1,105,338	+		GFF4188	0.56	-0.9
1,105,338	+		GFF4188	0.56	-0.4
1,105,338	+		GFF4188	0.56	-0.8
1,105,338	+		GFF4188	0.56	+1.0
1,105,339	-		GFF4188	0.56	+0.0
1,105,339	-		GFF4188	0.56	-0.2
1,105,392	+		GFF4188	0.62	-0.7
1,105,392	+		GFF4188	0.62	+1.1
1,105,392	+		GFF4188	0.62	-0.3
1,105,393	-		GFF4188	0.62	-0.2
1,105,393	-		GFF4188	0.62	+0.8
1,105,393	-		GFF4188	0.62	-0.0
1,105,393	-		GFF4188	0.62	+0.4
1,105,393	-		GFF4188	0.62	+0.2
1,105,449	+		GFF4188	0.68	-0.5
1,105,525	-		GFF4188	0.76	-0.3
1,105,525	-		GFF4188	0.76	+0.3
1,105,638	+		GFF4188	0.89	-0.4
1,105,638	+		GFF4188	0.89	+0.1
1,105,638	+		GFF4188	0.89	-0.3
1,105,639	-		GFF4188	0.89	+0.2
1,105,737	+				-1.1
1,105,825	-		GFF4189	0.10	-0.4
1,105,908	+		GFF4189	0.20	+0.5
1,105,908	+		GFF4189	0.20	+1.6
1,105,908	+		GFF4189	0.20	+0.3
1,105,908	+		GFF4189	0.20	-1.2
1,105,908	+		GFF4189	0.20	-0.3
1,105,908	+		GFF4189	0.20	-0.8
1,105,908	+		GFF4189	0.20	-0.6
1,105,908	+		GFF4189	0.20	+0.9
1,105,908	+		GFF4189	0.20	+0.3
1,105,908	+		GFF4189	0.20	-0.8
1,105,909	-		GFF4189	0.20	+0.5
1,105,909	-		GFF4189	0.20	+0.3
1,105,909	-		GFF4189	0.20	+0.5
1,105,909	-		GFF4189	0.20	-0.6
1,105,909	-		GFF4189	0.20	+1.1
1,105,909	-		GFF4189	0.20	-0.4
1,105,909	-		GFF4189	0.20	-0.3
1,105,909	-		GFF4189	0.20	+0.6
1,106,551	-				+0.5
1,106,633	-				-0.1
1,106,955	+		GFF4190	0.43	-0.0
1,106,955	+		GFF4190	0.43	+0.1
1,106,955	+		GFF4190	0.43	+2.0
1,106,955	+		GFF4190	0.43	+0.4
1,106,956	-		GFF4190	0.43	+0.7
1,106,956	-		GFF4190	0.43	-0.6
1,106,956	-		GFF4190	0.43	+0.7
1,107,166	+		GFF4190	0.82	+0.3
1,107,167	-		GFF4190	0.82	-0.2
1,107,167	-		GFF4190	0.82	-0.4
1,107,167	-		GFF4190	0.82	-0.8
1,107,167	-		GFF4190	0.82	+0.6
1,107,167	-		GFF4190	0.82	+0.0
1,107,201	+		GFF4190	0.88	+0.4
1,107,201	+		GFF4190	0.88	+0.2
1,107,201	+		GFF4190	0.88	+0.4
1,107,201	+		GFF4190	0.88	+0.7
1,107,201	+		GFF4190	0.88	-0.9
1,107,202	-		GFF4190	0.89	+0.2
1,107,202	-		GFF4190	0.89	-0.0
1,107,202	-		GFF4190	0.89	+0.4
1,107,202	-		GFF4190	0.89	+0.2
1,107,202	-		GFF4190	0.89	-0.3
1,107,202	-		GFF4190	0.89	+0.2
1,107,323	+				-0.0
1,107,323	+				+0.1
1,107,323	+				-0.6
1,107,324	-				-0.1
1,107,324	-				+0.1
1,107,324	-				-0.2
1,107,461	+		GFF4191	0.28	+0.5
1,107,461	+		GFF4191	0.28	-0.4
1,107,461	+		GFF4191	0.28	-0.2
1,107,461	+		GFF4191	0.28	+0.5
1,107,461	+		GFF4191	0.28	+0.4
1,107,462	-		GFF4191	0.28	+1.1
1,107,462	-		GFF4191	0.28	+1.3
1,107,462	-		GFF4191	0.28	+0.1
1,107,462	-		GFF4191	0.28	+0.6
1,107,462	-		GFF4191	0.28	+0.6
1,107,462	-		GFF4191	0.28	+0.1