Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4099

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
1,008,254	+		GFF4097	0.89	+0.4
1,008,254	+		GFF4097	0.89	-0.1
1,008,255	-		GFF4097	0.89	+0.8
1,008,255	-		GFF4097	0.89	-0.3
1,008,390	-				-0.1
1,008,611	+		GFF4098	0.28	-1.9
1,008,611	+		GFF4098	0.28	-0.8
1,008,612	-		GFF4098	0.28	-2.8
1,008,683	+		GFF4098	0.38	-1.6
1,008,683	+		GFF4098	0.38	+1.0
1,008,684	-		GFF4098	0.38	-2.6
1,009,324	+				-2.1
1,009,324	+				+0.5
1,009,325	-				-0.9
1,009,325	-				+0.4
1,009,325	-				+0.5
1,009,393	+		GFF4099	0.13	-1.8
1,009,393	+		GFF4099	0.13	-0.2
1,009,420	+		GFF4099	0.15	-0.8
1,009,420	+		GFF4099	0.15	-0.8
1,009,600	+		GFF4099	0.27	-0.3
1,009,600	+		GFF4099	0.27	+0.1
1,009,600	+		GFF4099	0.27	-0.8
1,009,600	+		GFF4099	0.27	-0.3
1,009,600	+		GFF4099	0.27	-0.5
1,009,601	-		GFF4099	0.27	-1.5
1,009,601	-		GFF4099	0.27	-0.8
1,009,601	-		GFF4099	0.27	+0.0
1,009,601	-		GFF4099	0.27	-0.4
1,009,603	+		GFF4099	0.27	-1.1
1,009,603	+		GFF4099	0.27	-0.3
1,009,603	+		GFF4099	0.27	-1.0
1,009,603	+		GFF4099	0.27	-0.2
1,009,603	+		GFF4099	0.27	+0.2
1,009,603	+		GFF4099	0.27	-0.8
1,009,604	-		GFF4099	0.27	-0.3
1,009,604	-		GFF4099	0.27	+0.1
1,009,604	-		GFF4099	0.27	+0.5
1,009,604	-		GFF4099	0.27	-0.4
1,009,604	-		GFF4099	0.27	-0.3
1,009,844	-		GFF4099	0.42	-0.8
1,009,937	+		GFF4099	0.48	-0.2
1,009,939	+		GFF4099	0.49	+1.8
1,009,940	-		GFF4099	0.49	-0.1
1,009,940	-		GFF4099	0.49	-0.6
1,009,940	-		GFF4099	0.49	+0.3
1,010,020	+		GFF4099	0.54	+0.2
1,010,020	+		GFF4099	0.54	+0.2
1,010,020	+		GFF4099	0.54	+0.4
1,010,021	-		GFF4099	0.54	+1.0
1,010,089	+		GFF4099	0.58	+0.8
1,010,089	+		GFF4099	0.58	+0.3
1,010,089	+		GFF4099	0.58	-0.2
1,010,089	+		GFF4099	0.58	-0.5
1,010,089	+		GFF4099	0.58	-1.2
1,010,090	-		GFF4099	0.58	+0.0
1,010,090	-		GFF4099	0.58	-1.0
1,010,090	-		GFF4099	0.58	-1.3
1,010,090	-		GFF4099	0.58	+0.4
1,010,090	-		GFF4099	0.58	-1.0
1,010,090	-		GFF4099	0.58	+0.8
1,010,090	-		GFF4099	0.58	+0.4
1,010,090	-		GFF4099	0.58	+0.5
1,010,428	+		GFF4099	0.80	+0.3
1,010,428	+		GFF4099	0.80	+0.2
1,010,429	-		GFF4099	0.80	+0.5
1,010,429	-		GFF4099	0.80	-0.5
1,010,429	-		GFF4099	0.80	-0.6
1,010,629	+				+0.4
1,010,629	+				-0.7
1,010,653	+				-0.3
1,010,654	-				-0.5
1,010,668	+				-1.1
1,010,668	+				-0.7
1,010,668	+				+0.9
1,010,669	-				+0.1
1,010,669	-				+0.7
1,010,671	+				+0.3
1,010,671	+				+0.3
1,010,671	+				-0.8
1,010,671	+				-0.3
1,010,671	+				+0.6
1,010,671	+				-0.3
1,010,671	+				-0.2
1,010,672	-				-1.1
1,010,672	-				-0.0
1,010,672	-				+0.0
1,010,672	-				+0.5
1,010,680	+				+0.2
1,010,680	+				-0.5
1,010,680	+				-1.3
1,010,680	+				-1.3
1,010,681	-				+0.4
1,010,681	-				+0.5
1,010,681	-				+0.3
1,010,681	-				-0.5
1,010,681	-				+0.3
1,010,824	+		GFF4100	0.63	+0.1
1,010,824	+		GFF4100	0.63	-0.5
1,010,824	+		GFF4100	0.63	+0.5
1,010,825	-		GFF4100	0.63	-0.5
1,010,825	-		GFF4100	0.63	-0.2
1,010,864	-				+0.5
1,010,864	-				+0.3
1,011,607	+		GFF4101	0.53	-2.5
1,011,607	+		GFF4101	0.53	-0.4
1,011,607	+		GFF4101	0.53	+0.4