Experiment: Ying_Nucleobase14 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4034 and GFF4035 overlap by 44 nucleotides GFF4035 and GFF4036 are separated by 254 nucleotides
GFF4034 - Chromosome initiation inhibitor, at 951,233 to 952,135
GFF4034
GFF4035 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 952,092 to 953,339
GFF4035
GFF4036 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 953,594 to 954,883
GFF4036
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 951.122 kb on + strand at 951.225 kb on + strand at 951.225 kb on + strand at 951.225 kb on + strand at 951.225 kb on + strand at 951.542 kb on + strand, within GFF4034 at 951.543 kb on - strand, within GFF4034 at 951.914 kb on + strand, within GFF4034 at 951.914 kb on + strand, within GFF4034 at 952.371 kb on + strand, within GFF4035 at 952.519 kb on + strand, within GFF4035 at 952.520 kb on - strand, within GFF4035 at 952.520 kb on - strand, within GFF4035 at 952.520 kb on - strand, within GFF4035 at 952.535 kb on - strand, within GFF4035 at 953.197 kb on + strand, within GFF4035 at 953.198 kb on - strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.382 kb on - strand at 953.382 kb on - strand at 953.382 kb on - strand at 953.382 kb on - strand at 953.453 kb on - strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.512 kb on - strand at 953.747 kb on + strand, within GFF4036 at 953.747 kb on + strand, within GFF4036 at 953.747 kb on + strand, within GFF4036 at 953.895 kb on - strand, within GFF4036 at 954.095 kb on + strand, within GFF4036 at 954.222 kb on - strand, within GFF4036
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep B; time point 2 remove 951,122 + +0.0 951,225 + -0.0 951,225 + -0.1 951,225 + -0.4 951,225 + +1.4 951,542 + GFF4034 0.34 -0.1 951,543 - GFF4034 0.34 +0.7 951,914 + GFF4034 0.75 +2.0 951,914 + GFF4034 0.75 +0.1 952,371 + GFF4035 0.22 +0.5 952,519 + GFF4035 0.34 -0.1 952,520 - GFF4035 0.34 +0.8 952,520 - GFF4035 0.34 -0.2 952,520 - GFF4035 0.34 +0.0 952,535 - GFF4035 0.35 -0.3 953,197 + GFF4035 0.89 +0.1 953,198 - GFF4035 0.89 -0.1 953,203 + GFF4035 0.89 -0.1 953,203 + GFF4035 0.89 +0.2 953,203 + GFF4035 0.89 -0.3 953,203 + GFF4035 0.89 +1.5 953,203 + GFF4035 0.89 +0.7 953,203 + GFF4035 0.89 -0.2 953,203 + GFF4035 0.89 +1.5 953,204 - GFF4035 0.89 -0.5 953,204 - GFF4035 0.89 -0.5 953,204 - GFF4035 0.89 +0.4 953,382 - +0.8 953,382 - +1.1 953,382 - -1.1 953,382 - +0.3 953,453 - +0.0 953,511 + -0.3 953,511 + -0.8 953,511 + -0.1 953,511 + -0.6 953,512 - +0.8 953,747 + GFF4036 0.12 -0.1 953,747 + GFF4036 0.12 -2.0 953,747 + GFF4036 0.12 -0.5 953,895 - GFF4036 0.23 +0.7 954,095 + GFF4036 0.39 -1.2 954,222 - GFF4036 0.49 +0.5
Or see this region's nucleotide sequence